Wall clock time and date at job start Sun Mar 29 2020 21:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00309 * 2 1 4 4 H 1.07994 * 119.99828 * 200.38759 * 3 2 1 5 5 C 1.38811 * 119.99808 * 20.38101 * 3 2 1 6 6 N 1.31614 * 119.99999 * 14.97931 * 5 3 2 7 7 Si 1.86791 * 119.99738 * 194.97336 * 5 3 2 8 8 H 1.48500 * 109.47386 * 85.00646 * 7 5 3 9 9 H 1.48505 * 109.47212 * 205.00739 * 7 5 3 10 10 H 1.48502 * 109.47627 * 325.00612 * 7 5 3 11 11 C 1.46499 * 119.99472 * 179.97438 * 2 1 3 12 12 C 1.50695 * 109.47466 * 269.99713 * 11 2 1 13 13 C 1.38755 * 120.38785 * 89.99916 * 12 11 2 14 14 C 1.38506 * 118.45588 * 180.02562 * 13 12 11 15 15 C 1.38561 * 119.13336 * 0.02562 * 14 13 12 16 16 F 1.35102 * 119.64966 * 180.02562 * 15 14 13 17 17 N 1.32026 * 120.70313 * 359.97143 * 15 14 13 18 18 C 1.31944 * 121.68848 * 0.05000 * 17 15 14 19 19 H 1.09004 * 109.47571 * 275.10306 * 1 2 3 20 20 H 1.09005 * 109.47121 * 35.09368 * 1 2 3 21 21 H 1.08993 * 109.47729 * 155.09732 * 1 2 3 22 22 H 0.97004 * 120.00054 * 179.97438 * 6 5 3 23 23 H 1.09008 * 109.47058 * 150.00372 * 11 2 1 24 24 H 1.09001 * 109.47623 * 30.00275 * 11 2 1 25 25 H 1.08004 * 120.77235 * 0.02562 * 13 12 11 26 26 H 1.07994 * 120.43312 * 179.72612 * 14 13 12 27 27 H 1.07995 * 119.60117 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2151 -0.3258 5 6 1.5209 2.3504 0.4187 6 7 0.3879 2.2834 1.0850 7 14 2.2828 4.0125 0.0364 8 1 1.8685 4.4464 -1.3220 9 1 1.8229 5.0096 1.0363 10 1 3.7628 3.9031 0.0911 11 6 2.1973 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 1.5289 -2.5039 2.0837 14 6 1.7999 -2.8792 3.3891 15 6 2.9723 -2.4449 3.9863 16 9 3.2473 -2.8052 5.2591 17 7 3.8241 -1.6836 3.3245 18 6 3.5961 -1.3080 2.0804 19 1 -0.3634 0.0914 1.0236 20 1 -0.3633 0.8409 -0.5908 21 1 -0.3634 -0.9320 -0.4327 22 1 -0.0514 3.0972 1.3779 23 1 3.1499 -1.1387 -0.5133 24 1 1.6083 -2.0287 -0.5130 25 1 0.6229 -2.8270 1.5926 26 1 1.1042 -3.4982 3.9359 27 1 4.3158 -0.6845 1.5710 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306641458.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:45 Heat of formation + Delta-G solvation = 15.831411 kcal Electronic energy + Delta-G solvation = -13497.575738 eV Core-core repulsion = 10977.967393 eV Total energy + Delta-G solvation = -2519.608345 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.56741 -39.53629 -35.75520 -32.57309 -31.56718 -30.09961 -26.23460 -25.72700 -23.39684 -22.38206 -20.64265 -17.61542 -17.03800 -16.45624 -15.60969 -15.29489 -14.63925 -14.02155 -13.73775 -13.50534 -13.19831 -12.69673 -12.43889 -12.31863 -11.58574 -11.05091 -10.95091 -10.76119 -10.51228 -10.11053 -10.00452 -9.47902 -9.20067 -8.65778 -8.31756 -6.94957 -5.86246 -3.28070 1.43692 1.63930 3.33553 3.39826 3.40998 4.04017 4.13454 4.43440 4.96312 5.25547 5.32176 5.43204 5.49706 5.59362 5.81949 6.23810 6.26085 6.33091 6.47727 6.61050 6.81364 7.15037 7.24999 7.59472 7.69753 8.15770 8.24040 9.08336 9.70910 10.18065 11.18136 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.037780 B = 0.009256 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.951935 B = 3024.181049 C = 3300.147286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.588 5.588 3 C -0.259 4.259 4 H 0.074 0.926 5 C 0.004 3.996 6 N -0.901 5.901 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.184 3.816 12 C -0.138 4.138 13 C -0.049 4.049 14 C -0.195 4.195 15 C 0.274 3.726 16 F -0.127 7.127 17 N -0.517 5.517 18 C 0.144 3.856 19 H 0.030 0.970 20 H 0.047 0.953 21 H 0.001 0.999 22 H 0.255 0.745 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -8.768 0.019 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.308 5.308 3 C -0.389 4.389 4 H 0.092 0.908 5 C -0.195 4.195 6 N -0.544 5.544 7 Si 0.737 3.263 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.203 1.203 11 C 0.056 3.944 12 C -0.145 4.145 13 C -0.076 4.076 14 C -0.216 4.216 15 C 0.119 3.881 16 F -0.106 7.106 17 N -0.231 5.231 18 C -0.013 4.013 19 H 0.048 0.952 20 H 0.066 0.934 21 H 0.020 0.980 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.067 -8.329 0.511 8.597 hybrid contribution -0.472 0.764 0.088 0.902 sum 1.595 -7.565 0.599 7.754 Atomic orbital electron populations 1.20873 0.82114 0.95885 0.99632 1.44262 1.02122 1.00336 1.84055 1.19279 0.97534 0.84540 1.37502 0.90810 1.25058 0.97781 0.98752 0.97939 1.70082 1.18599 1.27241 1.38468 0.86221 0.78826 0.83555 0.77662 1.21245 1.21680 1.20303 1.19953 0.97162 0.88769 0.88524 1.22283 0.94022 0.94983 1.03193 1.21287 0.98569 0.94823 0.92929 1.21662 0.97689 1.05124 0.97134 1.18045 0.92359 0.96894 0.80760 1.91548 1.94184 1.89510 1.35381 1.66929 1.32947 1.12672 1.10511 1.22312 0.96177 0.95188 0.87635 0.95201 0.93391 0.98038 0.93486 0.92120 0.92823 0.84683 0.84588 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.71 9.02 59.84 0.54 4.25 15 2 N -0.59 -13.83 2.91 -182.50 -0.53 -14.36 15 3 C -0.26 -6.74 9.68 -15.06 -0.15 -6.89 15 4 H 0.07 1.85 7.86 -52.49 -0.41 1.44 15 5 C 0.00 0.11 5.06 -17.43 -0.09 0.02 15 6 N -0.90 -25.63 10.67 55.49 0.59 -25.04 15 7 Si 0.91 21.34 29.58 -169.99 -5.03 16.31 15 8 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 9 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 11 C 0.18 3.44 5.86 -5.20 -0.03 3.41 15 12 C -0.14 -2.55 5.48 -104.48 -0.57 -3.13 15 13 C -0.05 -0.82 9.86 -39.29 -0.39 -1.21 15 14 C -0.19 -3.15 10.09 -39.36 -0.40 -3.55 15 15 C 0.27 5.06 8.41 -17.35 -0.15 4.91 15 16 F -0.13 -2.25 17.29 2.25 0.04 -2.21 15 17 N -0.52 -10.31 10.37 -13.59 -0.14 -10.45 15 18 C 0.14 2.76 10.86 -17.55 -0.19 2.57 15 19 H 0.03 0.76 7.40 -51.93 -0.38 0.38 15 20 H 0.05 1.21 7.21 -51.93 -0.37 0.83 15 21 H 0.00 0.02 7.83 -51.93 -0.41 -0.39 15 22 H 0.25 7.08 8.31 -40.82 -0.34 6.74 15 23 H 0.06 1.06 7.98 -51.92 -0.41 0.65 15 24 H 0.05 0.88 7.81 -51.93 -0.41 0.47 15 25 H 0.14 1.93 8.06 -52.48 -0.42 1.51 15 26 H 0.14 1.77 8.06 -52.49 -0.42 1.35 15 27 H 0.16 2.87 8.06 -52.49 -0.42 2.45 15 LS Contribution 245.03 15.07 3.69 3.69 Total: -1.00 -29.45 245.03 -5.60 -35.05 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -2.80 Total: -3.38 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.42 Total: 0.40 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.08 Total: -49.85 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.45 -5.60 -35.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306641458.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.882 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds