Wall clock time and date at job start Sun Mar 29 2020 21:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47399 * 270.00254 * 3 2 1 5 5 H 1.48498 * 109.46983 * 30.00401 * 3 2 1 6 6 H 1.48500 * 109.47038 * 149.99889 * 3 2 1 7 7 C 1.38831 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00381 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99559 * 359.97438 * 7 2 1 10 10 C 1.34818 * 116.99776 * 180.02562 * 9 7 2 11 11 O 1.21576 * 119.99542 * 359.97438 * 10 9 7 12 12 C 1.46873 * 119.99992 * 180.02562 * 10 9 7 13 13 C 1.33147 * 119.99549 * 186.98318 * 12 10 9 14 14 C 1.51268 * 120.85537 * 12.14637 * 13 12 10 15 15 C 1.53664 * 108.31175 * 128.61636 * 14 13 12 16 16 C 1.52959 * 109.32554 * 54.86476 * 15 14 13 17 17 C 1.52963 * 109.81323 * 296.27341 * 16 15 14 18 18 C 1.51272 * 120.84673 * 192.42304 * 13 12 10 19 19 H 0.97002 * 119.99753 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.00183 * 6.70232 * 12 10 9 21 21 H 1.08999 * 109.62359 * 248.39293 * 14 13 12 22 22 H 1.09001 * 109.62597 * 8.95866 * 14 13 12 23 23 H 1.08994 * 109.62623 * 294.84199 * 15 14 13 24 24 H 1.08998 * 109.42352 * 174.75937 * 15 14 13 25 25 H 1.08995 * 109.41287 * 176.16283 * 16 15 14 26 26 H 1.09004 * 109.41516 * 56.37212 * 16 15 14 27 27 H 1.08999 * 109.47766 * 303.61423 * 17 16 15 28 28 H 1.09004 * 109.47788 * 183.57920 * 17 16 15 29 29 H 1.08995 * 109.62992 * 351.04570 * 18 13 12 30 30 H 1.09005 * 109.62605 * 111.61075 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0082 -1.2023 -0.0005 8 1 3.0882 -1.2024 -0.0010 9 8 1.3339 -2.3700 -0.0005 10 6 2.0682 -3.5007 -0.0005 11 8 3.2823 -3.4370 -0.0010 12 6 1.4014 -4.8093 -0.0011 13 6 2.1189 -5.9221 0.1391 14 6 3.5677 -5.8619 0.5697 15 6 3.7593 -6.8205 1.7553 16 6 3.2776 -8.2173 1.3598 17 6 1.7757 -8.1855 1.0715 18 6 1.5078 -7.2786 -0.1342 19 1 -0.4850 0.8401 0.0004 20 1 0.3286 -4.8687 -0.1107 21 1 4.2086 -6.1659 -0.2579 22 1 3.8170 -4.8456 0.8751 23 1 3.1831 -6.4656 2.6098 24 1 4.8156 -6.8619 2.0210 25 1 3.4754 -8.9131 2.1752 26 1 3.8108 -8.5453 0.4675 27 1 1.2465 -7.7984 1.9422 28 1 1.4262 -9.1944 0.8523 29 1 0.4330 -7.1731 -0.2814 30 1 1.9614 -7.7116 -1.0259 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306694378.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:28 Heat of formation + Delta-G solvation = -80.585354 kcal Electronic energy + Delta-G solvation = -13641.609344 eV Core-core repulsion = 11208.987609 eV Total energy + Delta-G solvation = -2432.621736 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.21565 -37.81215 -35.17840 -32.26386 -32.09142 -30.71696 -27.06598 -25.03463 -22.70583 -21.71386 -20.08179 -17.98079 -17.67855 -16.37726 -15.09122 -14.74690 -14.43819 -14.28214 -14.10538 -13.56651 -13.13338 -12.59922 -12.29140 -12.13339 -11.69682 -11.42155 -11.23237 -10.90068 -10.73639 -10.56833 -10.42645 -10.17399 -10.07550 -9.77482 -8.67725 -8.50451 -8.39162 -6.40321 -4.03719 1.92032 3.17652 3.20183 3.26656 3.99423 4.10024 4.61716 4.89532 5.01380 5.09153 5.19180 5.37514 5.41761 5.59185 5.69238 5.78952 5.79540 6.00861 6.10162 6.15772 6.22153 6.25261 6.49297 6.58107 6.83740 6.96821 7.27465 7.49180 7.99429 8.80049 9.08512 9.92257 10.77836 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.068454 B = 0.006691 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.938612 B = 4183.523607 C = 4449.110618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.376 4.376 8 H 0.096 0.904 9 O -0.210 6.210 10 C 0.425 3.575 11 O -0.552 6.552 12 C -0.169 4.169 13 C -0.061 4.061 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.085 4.085 19 H 0.270 0.730 20 H 0.126 0.874 21 H 0.068 0.932 22 H 0.125 0.875 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -12.584 1.657 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.114 0.886 9 O -0.117 6.117 10 C 0.276 3.724 11 O -0.453 6.453 12 C -0.188 4.188 13 C -0.062 4.062 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.122 4.122 19 H 0.080 0.920 20 H 0.143 0.857 21 H 0.086 0.914 22 H 0.142 0.858 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.941 -12.382 1.664 12.835 hybrid contribution 0.224 0.761 -0.063 0.796 sum 3.165 -11.621 1.601 12.151 Atomic orbital electron populations 1.69985 1.06093 1.27729 1.46123 1.25378 0.95807 0.98957 0.96308 0.85662 0.79048 0.79691 0.78735 1.19868 1.20330 1.19064 1.21275 0.92462 0.80035 1.51483 0.88590 1.83962 1.39256 1.13435 1.75025 1.21119 0.85967 0.86048 0.79269 1.90450 1.15399 1.87446 1.51994 1.21760 0.99849 0.90030 1.07118 1.22471 0.96477 0.93487 0.93768 1.21639 0.92390 1.04090 0.97273 1.21678 1.00653 0.94561 0.98531 1.21550 0.95901 0.97398 1.01006 1.21566 0.96620 0.98941 0.98247 1.20845 1.00512 0.92552 0.98327 0.92037 0.85661 0.91396 0.85774 0.92137 0.92026 0.92435 0.92109 0.91777 0.92014 0.91021 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.73 13.67 55.49 0.76 -24.97 16 2 C 0.04 1.14 5.50 -17.52 -0.10 1.04 16 3 Si 0.94 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.38 -11.37 9.65 30.95 0.30 -11.08 16 8 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 9 O -0.21 -6.26 9.75 -21.82 -0.21 -6.47 16 10 C 0.43 11.01 7.70 34.22 0.26 11.27 16 11 O -0.55 -14.88 12.46 -19.32 -0.24 -15.12 16 12 C -0.17 -3.42 9.78 -37.86 -0.37 -3.79 16 13 C -0.06 -1.04 5.38 -100.56 -0.54 -1.58 16 14 C -0.12 -2.01 5.32 -27.26 -0.15 -2.16 16 15 C -0.12 -1.59 5.95 -26.41 -0.16 -1.75 16 16 C -0.12 -1.36 5.81 -26.77 -0.16 -1.52 16 17 C -0.12 -1.30 5.94 -26.63 -0.16 -1.46 16 18 C -0.09 -1.09 6.04 -27.49 -0.17 -1.26 16 19 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 20 H 0.13 2.32 7.96 -52.49 -0.42 1.90 16 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.12 2.60 4.79 -52.86 -0.25 2.35 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 254.80 15.07 3.84 3.84 Total: -1.00 -32.29 254.80 -6.07 -38.35 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -3.96 Total: 0.11 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.23 Total: -12.27 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.76 Total: -24.97 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.45 Total: -21.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.29 -6.07 -38.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306694378.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.232 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds