Wall clock time and date at job start Sun Mar 29 2020 21:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47399 * 270.00254 * 3 2 1 5 5 H 1.48498 * 109.46983 * 30.00401 * 3 2 1 6 6 H 1.48500 * 109.47038 * 149.99889 * 3 2 1 7 7 C 1.38831 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00381 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99559 * 359.97438 * 7 2 1 10 10 C 1.34818 * 116.99776 * 180.02562 * 9 7 2 11 11 O 1.21576 * 119.99542 * 359.97438 * 10 9 7 12 12 C 1.46873 * 119.99992 * 180.02562 * 10 9 7 13 13 C 1.33147 * 119.99549 * 186.98318 * 12 10 9 14 14 C 1.51268 * 120.85537 * 12.14637 * 13 12 10 15 15 C 1.53664 * 108.31175 * 128.61636 * 14 13 12 16 16 C 1.52959 * 109.32554 * 54.86476 * 15 14 13 17 17 C 1.52963 * 109.81323 * 296.27341 * 16 15 14 18 18 C 1.51272 * 120.84673 * 192.42304 * 13 12 10 19 19 H 0.97002 * 119.99753 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.00183 * 6.70232 * 12 10 9 21 21 H 1.08999 * 109.62359 * 248.39293 * 14 13 12 22 22 H 1.09001 * 109.62597 * 8.95866 * 14 13 12 23 23 H 1.08994 * 109.62623 * 294.84199 * 15 14 13 24 24 H 1.08998 * 109.42352 * 174.75937 * 15 14 13 25 25 H 1.08995 * 109.41287 * 176.16283 * 16 15 14 26 26 H 1.09004 * 109.41516 * 56.37212 * 16 15 14 27 27 H 1.08999 * 109.47766 * 303.61423 * 17 16 15 28 28 H 1.09004 * 109.47788 * 183.57920 * 17 16 15 29 29 H 1.08995 * 109.62992 * 351.04570 * 18 13 12 30 30 H 1.09005 * 109.62605 * 111.61075 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0082 -1.2023 -0.0005 8 1 3.0882 -1.2024 -0.0010 9 8 1.3339 -2.3700 -0.0005 10 6 2.0682 -3.5007 -0.0005 11 8 3.2823 -3.4370 -0.0010 12 6 1.4014 -4.8093 -0.0011 13 6 2.1189 -5.9221 0.1391 14 6 3.5677 -5.8619 0.5697 15 6 3.7593 -6.8205 1.7553 16 6 3.2776 -8.2173 1.3598 17 6 1.7757 -8.1855 1.0715 18 6 1.5078 -7.2786 -0.1342 19 1 -0.4850 0.8401 0.0004 20 1 0.3286 -4.8687 -0.1107 21 1 4.2086 -6.1659 -0.2579 22 1 3.8170 -4.8456 0.8751 23 1 3.1831 -6.4656 2.6098 24 1 4.8156 -6.8619 2.0210 25 1 3.4754 -8.9131 2.1752 26 1 3.8108 -8.5453 0.4675 27 1 1.2465 -7.7984 1.9422 28 1 1.4262 -9.1944 0.8523 29 1 0.4330 -7.1731 -0.2814 30 1 1.9614 -7.7116 -1.0259 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306694378.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:27 Heat of formation + Delta-G solvation = -100.415801 kcal Electronic energy + Delta-G solvation = -13642.469257 eV Core-core repulsion = 11208.987609 eV Total energy + Delta-G solvation = -2433.481649 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.14004 -39.23952 -37.18094 -34.32468 -33.61623 -31.86000 -28.68397 -26.99684 -23.87342 -23.28257 -21.42628 -19.95567 -19.40069 -18.33672 -16.67951 -16.53816 -16.36801 -15.89651 -15.15610 -14.98455 -14.41588 -14.31162 -13.73238 -13.57876 -13.24732 -13.14155 -12.77239 -12.40703 -12.16809 -12.03587 -11.93756 -11.81476 -11.59622 -11.17056 -10.73413 -10.37446 -9.97266 -8.55945 -6.33486 0.30592 1.32719 1.39936 1.51121 2.13101 2.17940 2.87600 3.00013 3.78360 3.90961 4.07458 4.12412 4.29735 4.47340 4.50506 4.60746 4.69556 4.82426 5.02133 5.06741 5.11562 5.16164 5.19704 5.22643 5.37837 5.45646 5.57341 5.76784 5.88194 6.70535 6.88891 7.79061 8.65546 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.068454 B = 0.006691 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.938612 B = 4183.523607 C = 4449.110618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.420 4.420 8 H 0.082 0.918 9 O -0.247 6.247 10 C 0.424 3.576 11 O -0.572 6.572 12 C -0.217 4.217 13 C -0.016 4.016 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.086 4.086 19 H 0.279 0.721 20 H 0.141 0.859 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -14.532 1.730 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.840 3.160 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.100 0.900 9 O -0.156 6.156 10 C 0.276 3.724 11 O -0.473 6.473 12 C -0.236 4.236 13 C -0.017 4.017 14 C -0.164 4.164 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.123 4.123 19 H 0.089 0.911 20 H 0.158 0.842 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.365 -14.364 1.738 14.855 hybrid contribution 0.195 1.116 -0.066 1.135 sum 3.560 -13.248 1.672 13.819 Atomic orbital electron populations 1.70074 1.07821 1.29455 1.46847 1.26638 0.96923 1.02516 0.94685 0.84580 0.77629 0.74226 0.79596 1.18333 1.18248 1.18716 1.21481 0.92248 0.81311 1.54565 0.89981 1.83982 1.40329 1.14359 1.76920 1.22239 0.86103 0.87024 0.77065 1.90448 1.16367 1.88055 1.52425 1.21718 1.00855 0.88020 1.12983 1.23111 0.96055 0.94895 0.87596 1.21626 0.92656 1.02864 0.99226 1.21662 1.01659 0.95396 0.96308 1.21562 0.95952 0.95600 1.02419 1.21604 0.96565 1.00068 0.96905 1.21054 1.01330 0.89694 1.00231 0.91122 0.84161 0.90283 0.90120 0.93020 0.90798 0.90086 0.90961 0.92297 0.88739 0.89609 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.49 13.67 21.64 0.30 -55.19 16 2 C -0.01 -0.46 5.50 84.90 0.47 0.01 16 3 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.42 -26.76 9.65 67.96 0.66 -26.11 16 8 H 0.08 5.25 6.86 -2.91 -0.02 5.23 16 9 O -0.25 -15.64 9.75 10.65 0.10 -15.54 16 10 C 0.42 23.13 7.70 70.08 0.54 23.67 16 11 O -0.57 -32.55 12.46 19.59 0.24 -32.30 16 12 C -0.22 -8.99 9.78 23.39 0.23 -8.77 16 13 C -0.02 -0.52 5.38 -17.23 -0.09 -0.61 16 14 C -0.13 -4.27 5.32 30.25 0.16 -4.10 16 15 C -0.11 -2.83 5.95 30.80 0.18 -2.65 16 16 C -0.12 -2.14 5.81 30.57 0.18 -1.96 16 17 C -0.11 -2.02 5.94 30.66 0.18 -1.84 16 18 C -0.09 -1.89 6.04 30.10 0.18 -1.71 16 19 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 20 H 0.14 5.28 7.96 -2.91 -0.02 5.25 16 21 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 22 H 0.08 3.51 4.79 -17.19 -0.08 3.42 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.72 7.93 -2.39 -0.02 1.70 16 30 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -74.67 254.80 6.40 -68.27 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.05 Total: 12.03 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 2.68 Total: -24.06 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.30 Total: -55.19 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: 0.35 Total: -47.84 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.67 6.40 -68.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306694378.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.149 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds