Wall clock time and date at job start Sun Mar 29 2020 22:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.38536 * 119.99947 * 179.97438 * 11 10 9 13 13 N 1.32453 * 119.18662 * 359.73364 * 12 11 10 14 14 C 1.32300 * 120.76647 * 179.75700 * 13 12 11 15 15 C 1.38795 * 119.16166 * 0.50564 * 14 13 12 16 16 F 1.35101 * 120.73836 * 179.72839 * 15 14 13 17 17 C 1.38775 * 118.50921 * 359.74748 * 15 14 13 18 18 N 1.32301 * 119.17159 * 0.02562 * 17 15 14 19 19 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 21 21 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 22 22 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 23 23 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 24 24 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 25 25 H 1.07992 * 120.42390 * 180.22849 * 14 13 12 26 26 H 1.08004 * 120.41176 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.2052 -6.1306 0.0007 13 7 3.5296 -6.1119 -0.0056 14 6 4.2224 -7.2390 -0.0014 15 6 3.5440 -8.4499 -0.0009 16 9 4.2196 -9.6198 -0.0021 17 6 2.1564 -8.4317 0.0005 18 7 1.5267 -7.2681 0.0008 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5566 0.8902 22 1 2.8718 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 0.5426 -4.9308 0.0011 25 1 5.3021 -7.2172 -0.0029 26 1 1.5975 -9.3559 0.0006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306734792.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:52 Heat of formation + Delta-G solvation = -17.050091 kcal Electronic energy + Delta-G solvation = -12882.570696 eV Core-core repulsion = 10296.110591 eV Total energy + Delta-G solvation = -2586.460105 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.79072 -41.89115 -37.51504 -35.10778 -34.84479 -32.44368 -30.17896 -26.78795 -25.87031 -24.08361 -22.78578 -19.47382 -19.08538 -18.39491 -18.15033 -17.03846 -16.56956 -16.04311 -15.90772 -15.57525 -14.98921 -14.93950 -14.25788 -14.01927 -13.25054 -13.02187 -12.73370 -12.47564 -12.42965 -12.06588 -11.60878 -11.37520 -11.13153 -10.58208 -10.15882 -8.97741 -8.24036 -6.34831 -0.03145 0.02630 1.42223 1.42868 1.56122 1.87004 2.42257 2.70966 3.00860 3.11250 3.13269 3.65092 3.87693 3.95190 4.45502 4.52930 4.65459 4.86808 5.25462 5.41524 5.57384 5.61085 5.79197 5.97619 6.16919 6.43476 6.79772 7.21300 7.34872 8.88485 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.084303 B = 0.005273 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.057193 B = 5308.565288 C = 5620.176233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.162 3.838 11 N -0.690 5.690 12 C 0.543 3.457 13 N -0.569 5.569 14 C 0.173 3.827 15 C -0.082 4.082 16 F -0.126 7.126 17 C 0.175 3.825 18 N -0.569 5.569 19 H 0.265 0.735 20 H 0.004 0.996 21 H 0.004 0.996 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.416 0.584 25 H 0.206 0.794 26 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 -15.286 0.008 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.019 4.019 10 C 0.039 3.961 11 N -0.324 5.324 12 C 0.187 3.813 13 N -0.292 5.292 14 C 0.004 3.996 15 C -0.111 4.111 16 F -0.105 7.105 17 C 0.006 3.994 18 N -0.291 5.291 19 H 0.074 0.926 20 H 0.022 0.978 21 H 0.022 0.978 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.253 0.747 25 H 0.223 0.777 26 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.104 -14.094 0.003 15.359 hybrid contribution 0.211 -0.014 0.001 0.212 sum 6.315 -14.107 0.004 15.456 Atomic orbital electron populations 1.70090 1.07744 1.27932 1.51201 1.25933 0.95772 1.03333 0.94466 0.85349 0.79135 0.78542 0.77737 1.18467 1.20413 1.20422 1.21483 0.93784 0.91512 1.51217 0.91643 1.19166 0.94458 0.92184 0.96063 1.21238 0.94391 0.80012 1.00477 1.44617 1.09266 1.01779 1.76768 1.19647 0.85902 0.86819 0.88937 1.68082 1.07029 1.31692 1.22414 1.23646 1.02482 0.84968 0.88486 1.19030 0.92616 0.83510 1.15896 1.91505 1.79659 1.44421 1.94886 1.23637 0.90500 0.96768 0.88456 1.68033 1.40673 0.97666 1.22762 0.92615 0.97781 0.97762 0.92743 0.92735 0.74705 0.77713 0.77226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.72 15 2 C 0.00 0.19 5.46 84.65 0.46 0.65 15 3 Si 0.97 43.25 29.54 68.60 2.03 45.28 15 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 7 C -0.54 -29.87 9.11 25.60 0.23 -29.63 15 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 15 9 C 0.02 0.95 5.09 29.85 0.15 1.11 15 10 C 0.16 6.78 5.59 86.38 0.48 7.26 15 11 N -0.69 -25.38 5.71 -350.98 -2.00 -27.38 15 12 C 0.54 18.39 8.43 261.46 2.20 20.59 15 13 N -0.57 -18.14 9.58 -197.78 -1.90 -20.03 15 14 C 0.17 4.09 11.30 84.76 0.96 5.05 15 15 C -0.08 -1.79 7.38 22.53 0.17 -1.62 15 16 F -0.13 -2.48 17.30 44.97 0.78 -1.70 15 17 C 0.18 3.88 11.29 84.75 0.96 4.84 15 18 N -0.57 -16.85 10.46 -197.79 -2.07 -18.91 15 19 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 20 H 0.00 0.21 8.14 -2.39 -0.02 0.19 15 21 H 0.00 0.22 8.14 -2.39 -0.02 0.20 15 22 H 0.05 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.05 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.42 14.67 8.59 -92.71 -0.80 13.88 15 25 H 0.21 3.30 8.06 -2.91 -0.02 3.28 15 26 H 0.21 2.88 8.06 -2.91 -0.02 2.86 15 Total: -1.00 -63.34 244.15 3.14 -60.20 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.41 Total: 9.02 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.61 Total: 8.25 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -5.68 Total: -121.04 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.78 Total: -1.70 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -63.34 3.14 -60.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306734792.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.152 kcal (2) G-P(sol) polarization free energy of solvation -63.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds