Wall clock time and date at job start Sun Mar 29 2020 21:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99924 * 2 1 4 4 C 1.46905 * 110.99606 * 123.95091 * 2 1 3 5 5 H 1.08997 * 115.51699 * 325.42417 * 4 2 1 6 6 C 1.52998 * 117.44153 * 179.97438 * 4 2 1 7 7 H 1.09006 * 119.52651 * 5.65221 * 6 4 2 8 8 C 1.54380 * 118.12813 * 160.68977 * 6 4 2 9 9 N 1.48550 * 104.59787 * 89.19483 * 8 6 4 10 10 C 1.46904 * 111.00301 * 200.96173 * 9 8 6 11 11 C 1.50697 * 109.46891 * 170.00105 * 10 9 8 12 12 H 1.08002 * 120.00599 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99675 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00210 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00019 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.48565 * 104.22220 * 320.52060 * 9 8 6 20 20 C 1.54255 * 61.46248 * 253.24923 * 6 4 2 21 21 H 1.09001 * 121.78779 * 107.96090 * 20 6 4 22 22 H 1.08997 * 109.47326 * 296.05058 * 1 2 3 23 23 H 1.09001 * 109.47120 * 56.04407 * 1 2 3 24 24 H 1.08996 * 109.47468 * 176.04812 * 1 2 3 25 25 H 1.09003 * 109.47089 * 183.94681 * 3 2 1 26 26 H 1.08995 * 109.47384 * 303.95004 * 3 2 1 27 27 H 1.09004 * 109.47053 * 63.95401 * 3 2 1 28 28 H 1.09005 * 110.40753 * 330.41418 * 8 6 4 29 29 H 1.09003 * 110.40769 * 207.97877 * 8 6 4 30 30 H 1.08995 * 109.46715 * 50.00107 * 10 9 8 31 31 H 1.09007 * 109.46476 * 289.99961 * 10 9 8 32 32 H 0.96998 * 119.99640 * 180.02562 * 14 13 11 33 33 H 1.08994 * 110.41153 * 158.26152 * 19 9 8 34 34 H 1.09001 * 110.40558 * 280.70228 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.4075 -0.7098 2.0538 6 6 3.5157 -0.8624 1.2798 7 1 4.1555 -0.2951 0.6038 8 6 4.0948 -1.2476 2.6580 9 7 4.1627 -2.7313 2.6342 10 6 4.2138 -3.2780 3.9968 11 6 4.0347 -4.7734 3.9451 12 1 3.8970 -5.2683 2.9951 13 6 4.0475 -5.5099 5.1106 14 7 3.8907 -6.8149 5.0656 15 14 4.2864 -4.6541 6.7537 16 1 5.7355 -4.5888 7.0718 17 1 3.7333 -3.2778 6.6801 18 1 3.5804 -5.4151 7.8156 19 6 2.9141 -3.1427 1.9421 20 6 2.7390 -2.1091 0.8088 21 1 2.7895 -2.4618 -0.2213 22 1 -0.3634 0.4513 0.9232 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0707 26 1 1.5899 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 3.4335 -0.9100 3.4561 29 1 5.0910 -0.8234 2.7837 30 1 3.4168 -2.8370 4.5953 31 1 5.1786 -3.0429 4.4465 32 1 3.8994 -7.3330 5.8857 33 1 3.0214 -4.1455 1.5288 34 1 2.0681 -3.1018 2.6281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306843269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:12 Heat of formation + Delta-G solvation = 51.428971 kcal Electronic energy + Delta-G solvation = -14014.010487 eV Core-core repulsion = 11755.239168 eV Total energy + Delta-G solvation = -2258.771320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.50387 -36.53663 -33.48804 -31.88375 -28.12773 -27.77350 -27.33234 -24.60547 -22.45639 -20.35870 -19.97168 -19.58888 -16.70868 -16.29082 -15.17190 -14.67791 -14.59967 -14.12205 -13.81879 -13.10481 -12.72908 -12.58605 -12.39501 -12.29174 -11.85236 -11.73128 -11.50445 -11.14927 -10.78548 -10.61638 -10.38163 -9.84835 -9.66403 -9.65205 -9.17606 -8.59571 -8.33820 -7.52783 -6.07135 -4.05499 3.27564 3.34782 3.36743 3.63830 3.81738 4.40496 4.82244 5.03006 5.06299 5.14239 5.24235 5.27813 5.36808 5.43783 5.48947 5.54266 5.70103 5.79496 5.80583 5.91450 6.10689 6.16923 6.43726 6.59322 6.65502 6.82047 6.92895 7.00267 7.08125 7.44431 7.85988 7.91975 8.60517 8.99620 9.54092 11.05667 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.055209 B = 0.006813 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.042249 B = 4109.057226 C = 4227.602525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.519 5.519 3 C 0.026 3.974 4 C 0.022 3.978 5 H 0.087 0.913 6 C -0.152 4.152 7 H 0.111 0.889 8 C 0.056 3.944 9 N -0.500 5.500 10 C 0.150 3.850 11 C -0.516 4.516 12 H 0.082 0.918 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.876 3.124 16 H -0.275 1.275 17 H -0.269 1.269 18 H -0.286 1.286 19 C 0.079 3.921 20 C -0.137 4.137 21 H 0.117 0.883 22 H 0.024 0.976 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.078 0.922 30 H -0.010 1.010 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 14.628 -7.328 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.243 5.243 3 C -0.122 4.122 4 C -0.087 4.087 5 H 0.104 0.896 6 C -0.171 4.171 7 H 0.129 0.871 8 C -0.072 4.072 9 N -0.224 5.224 10 C 0.024 3.976 11 C -0.554 4.554 12 H 0.100 0.900 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.703 3.297 16 H -0.200 1.200 17 H -0.193 1.193 18 H -0.212 1.212 19 C -0.049 4.049 20 C -0.157 4.157 21 H 0.135 0.865 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.008 0.992 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.159 14.029 -7.896 16.627 hybrid contribution -0.823 1.051 2.157 2.537 sum -4.982 15.080 -5.739 16.887 Atomic orbital electron populations 1.22359 0.86874 1.02549 1.00145 1.61618 1.07923 1.13328 1.41388 1.22355 1.01159 0.88563 1.00087 1.23305 0.93809 0.98898 0.92697 0.89587 1.23518 0.91701 1.02807 0.99059 0.87062 1.22681 0.99755 0.91398 0.93416 1.65492 1.34584 1.03119 1.19166 1.20351 0.95662 0.96704 0.84915 1.21068 1.49590 0.89291 0.95428 0.90038 1.24908 0.94707 0.94712 0.98880 1.69894 1.50374 1.05348 1.28135 0.86851 0.78757 0.79999 0.84111 1.20038 1.19339 1.21177 1.22427 0.91557 0.97773 0.93105 1.24375 1.02725 0.88334 1.00244 0.86474 0.95710 0.91448 0.91006 0.91157 0.91602 0.95689 0.94724 0.90409 0.99236 0.95408 0.92617 0.89239 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.57 60.06 0.57 0.88 16 2 N -0.52 -6.58 5.17 -240.55 -1.24 -7.82 16 3 C 0.03 0.28 9.39 60.06 0.56 0.84 16 4 C 0.02 0.32 5.07 -65.54 -0.33 -0.01 16 5 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 6 C -0.15 -2.33 6.24 -89.24 -0.56 -2.89 16 7 H 0.11 1.57 7.22 -51.93 -0.38 1.20 16 8 C 0.06 0.99 6.29 -2.19 -0.01 0.98 16 9 N -0.50 -10.84 5.48 -231.41 -1.27 -12.11 16 10 C 0.15 3.73 3.89 -4.97 -0.02 3.71 16 11 C -0.52 -14.77 9.13 -34.44 -0.31 -15.08 16 12 H 0.08 2.51 6.88 -52.49 -0.36 2.15 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 15 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.08 1.59 5.37 -2.18 -0.01 1.58 16 20 C -0.14 -2.26 7.22 -87.07 -0.63 -2.89 16 21 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 22 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.74 6.87 -51.93 -0.36 0.38 16 26 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.62 7.81 -51.93 -0.41 0.21 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H -0.01 -0.25 6.94 -51.93 -0.36 -0.61 16 31 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.09 1.92 7.21 -51.93 -0.37 1.54 16 34 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -30.39 272.30 -8.73 -39.11 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.58 Total: -2.47 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.84 Total: -10.94 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -1.74 Total: -46.75 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.39 -8.73 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306843269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.543 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds