Wall clock time and date at job start Sun Mar 29 2020 21:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99924 * 2 1 4 4 C 1.46905 * 110.99606 * 123.95091 * 2 1 3 5 5 H 1.08997 * 115.51699 * 325.42417 * 4 2 1 6 6 C 1.52998 * 117.44153 * 179.97438 * 4 2 1 7 7 H 1.09006 * 119.52651 * 5.65221 * 6 4 2 8 8 C 1.54380 * 118.12813 * 160.68977 * 6 4 2 9 9 N 1.48550 * 104.59787 * 89.19483 * 8 6 4 10 10 C 1.46904 * 111.00301 * 200.96173 * 9 8 6 11 11 C 1.50697 * 109.46891 * 170.00105 * 10 9 8 12 12 H 1.08002 * 120.00599 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99675 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00210 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00019 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.48565 * 104.22220 * 320.52060 * 9 8 6 20 20 C 1.54255 * 61.46248 * 253.24923 * 6 4 2 21 21 H 1.09001 * 121.78779 * 107.96090 * 20 6 4 22 22 H 1.08997 * 109.47326 * 296.05058 * 1 2 3 23 23 H 1.09001 * 109.47120 * 56.04407 * 1 2 3 24 24 H 1.08996 * 109.47468 * 176.04812 * 1 2 3 25 25 H 1.09003 * 109.47089 * 183.94681 * 3 2 1 26 26 H 1.08995 * 109.47384 * 303.95004 * 3 2 1 27 27 H 1.09004 * 109.47053 * 63.95401 * 3 2 1 28 28 H 1.09005 * 110.40753 * 330.41418 * 8 6 4 29 29 H 1.09003 * 110.40769 * 207.97877 * 8 6 4 30 30 H 1.08995 * 109.46715 * 50.00107 * 10 9 8 31 31 H 1.09007 * 109.46476 * 289.99961 * 10 9 8 32 32 H 0.96998 * 119.99640 * 180.02562 * 14 13 11 33 33 H 1.08994 * 110.41153 * 158.26152 * 19 9 8 34 34 H 1.09001 * 110.40558 * 280.70228 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.4075 -0.7098 2.0538 6 6 3.5157 -0.8624 1.2798 7 1 4.1555 -0.2951 0.6038 8 6 4.0948 -1.2476 2.6580 9 7 4.1627 -2.7313 2.6342 10 6 4.2138 -3.2780 3.9968 11 6 4.0347 -4.7734 3.9451 12 1 3.8970 -5.2683 2.9951 13 6 4.0475 -5.5099 5.1106 14 7 3.8907 -6.8149 5.0656 15 14 4.2864 -4.6541 6.7537 16 1 5.7355 -4.5888 7.0718 17 1 3.7333 -3.2778 6.6801 18 1 3.5804 -5.4151 7.8156 19 6 2.9141 -3.1427 1.9421 20 6 2.7390 -2.1091 0.8088 21 1 2.7895 -2.4618 -0.2213 22 1 -0.3634 0.4513 0.9232 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0707 26 1 1.5899 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 3.4335 -0.9100 3.4561 29 1 5.0910 -0.8234 2.7837 30 1 3.4168 -2.8370 4.5953 31 1 5.1786 -3.0429 4.4465 32 1 3.8994 -7.3330 5.8857 33 1 3.0214 -4.1455 1.5288 34 1 2.0681 -3.1018 2.6281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306843269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:12 Heat of formation + Delta-G solvation = 28.752412 kcal Electronic energy + Delta-G solvation = -14014.993817 eV Core-core repulsion = 11755.239168 eV Total energy + Delta-G solvation = -2259.754649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.87514 -37.74639 -35.28310 -33.74956 -29.77221 -29.32099 -28.34922 -26.00241 -23.97543 -21.96001 -21.32001 -21.00404 -18.79251 -17.54245 -16.72221 -16.10719 -15.85208 -15.56498 -15.22444 -14.69507 -14.51487 -14.07581 -13.70949 -13.50085 -13.17617 -13.03590 -12.73023 -12.58357 -12.46403 -12.21908 -12.03744 -11.80641 -11.42163 -10.91990 -10.87221 -10.81877 -9.33386 -9.23895 -8.31412 -6.36447 1.33314 1.34559 1.45249 2.32053 2.47861 2.65728 3.01576 3.35606 3.72806 3.87001 4.01498 4.14419 4.20676 4.35739 4.47093 4.56309 4.64397 4.67885 4.70926 4.75109 4.83610 4.96220 5.00943 5.02132 5.04643 5.18572 5.29243 5.44070 5.90816 6.02372 6.07059 6.10405 6.53362 6.69440 7.27733 8.84808 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.055209 B = 0.006813 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.042249 B = 4109.057226 C = 4227.602525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.530 5.530 3 C 0.025 3.975 4 C 0.045 3.955 5 H 0.081 0.919 6 C -0.137 4.137 7 H 0.133 0.867 8 C 0.054 3.946 9 N -0.518 5.518 10 C 0.161 3.839 11 C -0.526 4.526 12 H 0.040 0.960 13 C 0.010 3.990 14 N -0.946 5.946 15 Si 0.949 3.051 16 H -0.263 1.263 17 H -0.253 1.253 18 H -0.280 1.280 19 C 0.083 3.917 20 C -0.150 4.150 21 H 0.123 0.877 22 H 0.028 0.972 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.028 0.972 28 H 0.037 0.963 29 H 0.095 0.905 30 H -0.010 1.010 31 H 0.033 0.967 32 H 0.268 0.732 33 H 0.060 0.940 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 17.533 -7.156 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.253 5.253 3 C -0.122 4.122 4 C -0.065 4.065 5 H 0.098 0.902 6 C -0.156 4.156 7 H 0.151 0.849 8 C -0.074 4.074 9 N -0.242 5.242 10 C 0.033 3.967 11 C -0.564 4.564 12 H 0.058 0.942 13 C -0.188 4.188 14 N -0.586 5.586 15 Si 0.772 3.228 16 H -0.188 1.188 17 H -0.177 1.177 18 H -0.205 1.205 19 C -0.045 4.045 20 C -0.170 4.170 21 H 0.141 0.859 22 H 0.047 0.953 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.008 0.992 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.204 16.960 -7.748 19.114 hybrid contribution -0.846 0.117 1.989 2.164 sum -5.050 17.077 -5.760 18.716 Atomic orbital electron populations 1.22433 0.85679 1.02640 1.01338 1.61624 1.09107 1.14563 1.40020 1.22437 1.01356 0.87266 1.01168 1.23174 0.93222 0.96977 0.93105 0.90168 1.23508 0.92560 1.01809 0.97747 0.84945 1.22759 1.01097 0.88559 0.94947 1.65413 1.35457 1.06004 1.17349 1.20116 0.95602 0.94076 0.86881 1.21291 1.49460 0.91655 0.94027 0.94203 1.25869 0.94203 0.95348 1.03355 1.70047 1.51721 1.07249 1.29564 0.85688 0.79339 0.79339 0.78435 1.18762 1.17652 1.20542 1.22247 0.90521 0.97806 0.93963 1.24158 1.05659 0.88174 0.98984 0.85910 0.95294 0.89283 0.91730 0.90978 0.89625 0.95357 0.94520 0.88706 0.99226 0.94946 0.92296 0.92135 0.95629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.57 127.69 1.22 1.72 16 2 N -0.53 -11.90 5.17 -914.96 -4.73 -16.64 16 3 C 0.02 0.43 9.39 127.69 1.20 1.63 16 4 C 0.04 1.21 5.07 46.32 0.23 1.45 16 5 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 6 C -0.14 -3.89 6.24 -9.90 -0.06 -3.95 16 7 H 0.13 3.26 7.22 -2.38 -0.02 3.24 16 8 C 0.05 1.82 6.29 86.45 0.54 2.36 16 9 N -0.52 -22.50 5.48 -886.05 -4.86 -27.36 16 10 C 0.16 7.96 3.89 85.56 0.33 8.29 16 11 C -0.53 -31.11 9.13 25.60 0.23 -30.88 16 12 H 0.04 2.61 6.88 -2.91 -0.02 2.59 16 13 C 0.01 0.59 5.47 84.65 0.46 1.05 16 14 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 15 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 C 0.08 3.43 5.37 86.45 0.46 3.89 16 20 C -0.15 -4.84 7.22 -8.49 -0.06 -4.90 16 21 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 22 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.24 6.87 -2.39 -0.02 1.22 16 26 H 0.09 1.17 8.12 -2.39 -0.02 1.16 16 27 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.04 1.23 7.81 -2.38 -0.02 1.21 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 30 H -0.01 -0.49 6.94 -2.39 -0.02 -0.50 16 31 H 0.03 1.57 7.57 -2.38 -0.02 1.55 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.06 2.79 7.21 -2.39 -0.02 2.77 16 34 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 Total: -1.00 -66.41 272.30 -1.84 -68.25 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.00 Total: 8.15 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 4.57 Total: -19.34 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -9.29 Total: -103.37 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -66.41 -1.84 -68.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306843269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.004 kcal (2) G-P(sol) polarization free energy of solvation -66.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds