Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34329 * 126.44611 * 2 1 4 4 N 1.34476 * 107.67261 * 179.97438 * 3 2 1 5 5 C 1.30257 * 108.69711 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.61906 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47348 * 165.02709 * 6 5 4 8 8 C 1.53003 * 109.47311 * 285.02708 * 6 5 4 9 9 N 1.46504 * 109.47224 * 45.02566 * 6 5 4 10 10 C 1.46504 * 119.99821 * 300.00068 * 9 6 5 11 11 C 1.36933 * 120.00043 * 119.99835 * 9 6 5 12 12 H 1.07996 * 120.00252 * 338.99820 * 11 9 6 13 13 C 1.38807 * 119.99879 * 158.72086 * 11 9 6 14 14 N 1.31622 * 120.00127 * 347.58003 * 13 11 9 15 15 Si 1.86800 * 119.99958 * 167.57875 * 13 11 9 16 16 H 1.48495 * 109.47227 * 90.00007 * 15 13 11 17 17 H 1.48506 * 109.47135 * 210.00014 * 15 13 11 18 18 H 1.48497 * 109.47241 * 329.99681 * 15 13 11 19 19 O 1.33963 * 108.76353 * 0.22980 * 5 4 3 20 20 H 1.09005 * 109.47511 * 90.01686 * 1 2 3 21 21 H 1.08996 * 109.47597 * 210.02369 * 1 2 3 22 22 H 1.09003 * 109.46774 * 330.02489 * 1 2 3 23 23 H 1.08008 * 126.16498 * 359.94897 * 3 2 1 24 24 H 1.09003 * 109.46838 * 300.00073 * 8 6 5 25 25 H 1.09004 * 109.46897 * 59.99882 * 8 6 5 26 26 H 1.08996 * 109.46953 * 179.97438 * 8 6 5 27 27 H 1.08999 * 109.47033 * 264.73389 * 10 9 6 28 28 H 1.09000 * 109.46819 * 24.73979 * 10 9 6 29 29 H 1.09002 * 109.46959 * 144.73136 * 10 9 6 30 30 H 0.96996 * 119.99832 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5764 -0.6548 0.0004 6 6 4.8003 -1.5341 0.0003 7 1 4.5162 -2.5523 0.2656 8 6 5.4329 -1.5277 -1.3928 9 7 5.7665 -1.0263 0.9776 10 6 6.3046 0.3293 0.8393 11 6 6.1666 -1.8188 2.0202 12 1 5.5552 -2.6535 2.3296 13 6 7.3608 -1.5527 2.6757 14 7 8.2231 -0.7058 2.1545 15 14 7.7441 -2.3964 4.2976 16 1 8.4597 -3.6710 4.0356 17 1 8.5997 -1.5099 5.1267 18 1 6.4779 -2.6791 5.0200 19 8 2.3074 -1.0840 -0.0054 20 1 -0.3634 -0.0003 -1.0277 21 1 -0.3634 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5135 23 1 1.9822 2.1113 -0.0008 24 1 4.7140 -1.9055 -2.1200 25 1 5.7170 -0.5094 -1.6582 26 1 6.3183 -2.1633 -1.3927 27 1 7.2578 0.2898 0.3122 28 1 5.6024 0.9431 0.2751 29 1 6.4538 0.7635 1.8279 30 1 9.0578 -0.5201 2.6124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306928435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = 47.489321 kcal Electronic energy + Delta-G solvation = -14068.952256 eV Core-core repulsion = 11674.177005 eV Total energy + Delta-G solvation = -2394.775250 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.70038 -36.31025 -34.01657 -32.69097 -31.45755 -29.15616 -26.29426 -25.90765 -23.71449 -22.09271 -21.05900 -19.53042 -16.80380 -16.32878 -16.12330 -14.95134 -14.31327 -13.98445 -13.46432 -13.18402 -13.04835 -12.66983 -12.36970 -12.10254 -11.49945 -11.29467 -10.89966 -10.79640 -10.66345 -10.53364 -10.48844 -10.06362 -9.88588 -9.29821 -8.57503 -8.11010 -6.86898 -5.72729 -3.20675 1.98991 3.17543 3.32365 3.38951 3.44643 3.47264 4.48655 4.73720 5.08951 5.29562 5.40063 5.44873 5.47089 5.63217 5.75018 5.94534 6.07845 6.29355 6.37291 6.52354 6.65043 6.79057 6.95356 7.28712 7.65590 7.78711 7.91830 8.35490 8.44412 9.21464 9.81779 10.29817 11.30574 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.043695 B = 0.008757 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.657532 B = 3196.767176 C = 3381.428290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.084 4.084 3 C -0.045 4.045 4 N -0.479 5.479 5 C 0.205 3.795 6 C 0.257 3.743 7 H 0.089 0.911 8 C -0.149 4.149 9 N -0.572 5.572 10 C 0.149 3.851 11 C -0.268 4.268 12 H 0.070 0.930 13 C 0.008 3.992 14 N -0.900 5.900 15 Si 0.908 3.092 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.280 1.280 19 O -0.210 6.210 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.172 0.828 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.587 0.694 -5.158 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.137 4.137 3 C -0.183 4.183 4 N -0.207 5.207 5 C -0.005 4.005 6 C 0.144 3.856 7 H 0.107 0.893 8 C -0.209 4.209 9 N -0.293 5.293 10 C 0.004 3.996 11 C -0.397 4.397 12 H 0.088 0.912 13 C -0.191 4.191 14 N -0.544 5.544 15 Si 0.737 3.263 16 H -0.212 1.212 17 H -0.215 1.215 18 H -0.205 1.205 19 O -0.097 6.097 20 H 0.094 0.906 21 H 0.091 0.909 22 H 0.103 0.897 23 H 0.190 0.810 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.839 1.104 -5.053 12.010 hybrid contribution -0.402 -0.582 1.030 1.249 sum -11.241 0.522 -4.022 11.950 Atomic orbital electron populations 1.20110 0.84981 1.03641 1.02903 1.23248 0.94674 0.85481 1.10306 1.23091 0.88817 0.99747 1.06676 1.70497 1.21353 1.09835 1.19042 1.28911 0.83972 0.91416 0.96208 1.18800 0.82131 0.92951 0.91685 0.89345 1.22198 1.00664 1.02742 0.95247 1.43960 1.45095 1.13225 1.27002 1.21086 0.95550 0.83170 0.99746 1.19256 1.02206 1.10636 1.07639 0.91177 1.24974 0.95383 0.99182 0.99548 1.70134 1.08705 1.37485 1.38026 0.86219 0.77919 0.78694 0.83435 1.21247 1.21485 1.20537 1.84429 1.18477 1.36677 1.70133 0.90624 0.90917 0.89721 0.81044 0.93742 0.92245 0.91003 0.95390 0.94095 0.94466 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.43 36.00 0.38 -0.25 16 2 C -0.08 -1.35 7.39 -35.69 -0.26 -1.62 16 3 C -0.04 -0.78 11.80 -17.77 -0.21 -0.99 16 4 N -0.48 -10.19 8.63 -11.10 -0.10 -10.28 16 5 C 0.21 4.34 7.13 -12.95 -0.09 4.25 16 6 C 0.26 5.60 3.26 -69.08 -0.23 5.38 16 7 H 0.09 1.84 7.85 -51.93 -0.41 1.43 16 8 C -0.15 -2.83 9.18 37.16 0.34 -2.49 16 9 N -0.57 -14.93 2.81 -174.81 -0.49 -15.43 16 10 C 0.15 3.92 7.87 59.85 0.47 4.39 16 11 C -0.27 -7.51 9.61 -15.06 -0.14 -7.66 16 12 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 13 C 0.01 0.23 5.12 -17.43 -0.09 0.14 16 14 N -0.90 -26.57 10.57 55.49 0.59 -25.98 16 15 Si 0.91 22.05 29.57 -169.99 -5.03 17.02 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 O -0.21 -4.05 10.78 5.37 0.06 -3.99 16 20 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.17 2.37 8.06 -52.48 -0.42 1.95 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.03 0.78 7.38 -51.93 -0.38 0.39 16 28 H 0.04 1.01 5.46 -51.93 -0.28 0.73 16 29 H 0.04 1.06 7.22 -51.93 -0.37 0.69 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 255.93 15.07 3.86 3.86 Total: -1.00 -31.77 255.93 -4.88 -36.65 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.93 Total: -3.01 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 0.16 Total: 1.16 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.00 Total: -51.69 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.06 Total: -3.99 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.77 -4.88 -36.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306928435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.138 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds