Wall clock time and date at job start Sun Mar 29 2020 21:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 116.99973 * 2 1 4 4 C 1.38713 * 120.04439 * 359.97438 * 3 2 1 5 5 C 1.38345 * 119.91932 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.99593 * 179.97438 * 5 4 3 7 7 C 1.38512 * 120.00832 * 0.02562 * 5 4 3 8 8 C 1.38209 * 120.08309 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.96160 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47086 * 89.99860 * 9 8 7 11 11 H 1.08001 * 120.00098 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99844 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99790 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00042 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46945 * 90.00092 * 14 12 10 16 16 H 1.48496 * 109.46720 * 209.99907 * 14 12 10 17 17 H 1.48503 * 109.47089 * 330.00048 * 14 12 10 18 18 C 1.38180 * 120.08200 * 359.97438 * 8 7 5 19 19 H 1.08999 * 109.47051 * 60.00416 * 1 2 3 20 20 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47485 * 300.00226 * 1 2 3 22 22 H 1.08003 * 120.03903 * 0.27493 * 4 3 2 23 23 H 1.08000 * 119.96166 * 179.97438 * 7 5 4 24 24 H 1.08993 * 109.47553 * 210.00214 * 9 8 7 25 25 H 1.09004 * 109.46761 * 330.00028 * 9 8 7 26 26 H 0.97004 * 120.00088 * 179.97438 * 13 12 10 27 27 H 1.07999 * 120.00105 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3747 -0.0005 5 6 1.9221 3.6060 -0.0011 6 9 1.1887 4.7406 -0.0021 7 6 3.3054 3.6757 -0.0016 8 6 4.0575 2.5161 -0.0011 9 6 5.5624 2.5951 -0.0011 10 6 6.0641 2.6221 1.4198 11 1 5.3632 2.5853 2.2407 12 6 7.4178 2.6939 1.6717 13 7 7.8555 2.7169 2.9116 14 14 8.6300 2.7568 0.2518 15 1 8.8773 4.1716 -0.1254 16 1 9.9084 2.1237 0.6641 17 1 8.0679 2.0252 -0.9118 18 6 3.4312 1.2844 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 0.2127 2.3198 0.0035 23 1 3.7971 4.6373 -0.0024 24 1 5.9720 1.7253 -0.5145 25 1 5.8786 3.5028 -0.5153 26 1 8.8079 2.7670 3.0889 27 1 4.0202 0.3792 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306938277.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:28 Heat of formation + Delta-G solvation = -68.037094 kcal Electronic energy + Delta-G solvation = -13180.153036 eV Core-core repulsion = 10624.615128 eV Total energy + Delta-G solvation = -2555.537908 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.56534 -39.75545 -37.22776 -33.26877 -31.33758 -29.92508 -27.85158 -26.94388 -23.12279 -22.17203 -20.47764 -17.63153 -16.83557 -16.60399 -15.75231 -15.70807 -15.42743 -15.07900 -14.36704 -14.18966 -13.23272 -12.86197 -12.38287 -12.22620 -11.87284 -11.56652 -11.39084 -11.07237 -10.78148 -10.55975 -10.14082 -9.98940 -9.43715 -8.62585 -8.14169 -7.86814 -6.11376 -4.11821 1.63055 1.76463 3.26713 3.34738 3.36737 3.40562 4.08971 4.37902 4.59424 5.04134 5.13503 5.15873 5.20816 5.41845 5.43972 5.52224 5.86623 6.04774 6.40902 6.50355 6.61844 6.77731 6.90956 7.12628 7.40023 7.58689 7.65605 8.42995 8.93084 9.47555 11.01351 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.037013 B = 0.008294 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.299465 B = 3375.265328 C = 3769.637328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.149 3.851 4 C -0.269 4.269 5 C 0.130 3.870 6 F -0.146 7.146 7 C -0.188 4.188 8 C 0.035 3.965 9 C 0.014 3.986 10 C -0.517 4.517 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.264 1.264 18 C -0.160 4.160 19 H 0.053 0.947 20 H 0.097 0.903 21 H 0.054 0.946 22 H 0.131 0.869 23 H 0.134 0.866 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.265 0.735 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 -2.394 -7.401 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.104 3.896 4 C -0.288 4.288 5 C 0.111 3.889 6 F -0.124 7.124 7 C -0.207 4.207 8 C 0.035 3.965 9 C -0.023 4.023 10 C -0.555 4.555 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.535 5.535 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.188 1.188 18 C -0.179 4.179 19 H 0.071 0.929 20 H 0.115 0.885 21 H 0.073 0.927 22 H 0.148 0.852 23 H 0.152 0.848 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.913 -2.539 -7.283 14.192 hybrid contribution 0.249 0.442 -0.481 0.699 sum -11.664 -2.097 -7.764 14.168 Atomic orbital electron populations 1.23015 0.78940 1.03555 1.01270 1.86090 1.20969 1.26862 1.88843 1.18686 0.92041 0.83255 0.95584 1.20859 1.00192 0.91362 1.16410 1.17362 0.89239 0.81122 1.01204 1.91447 1.77508 1.49499 1.93964 1.21004 0.91007 1.00519 1.08130 1.19939 0.97876 0.90343 0.88372 1.18882 0.86332 0.97999 0.99131 1.20868 0.92810 1.51709 0.90101 0.90636 1.24978 0.98184 0.94330 0.95576 1.69892 1.14727 1.50133 1.18761 0.86805 0.80821 0.78780 0.83142 1.20083 1.21156 1.18803 1.20430 0.90491 0.99178 1.07789 0.92851 0.88469 0.92746 0.85154 0.84761 0.94667 0.95185 0.92475 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 15 2 O -0.31 -4.82 10.50 -19.40 -0.20 -5.02 15 3 C 0.15 2.58 6.69 -39.22 -0.26 2.32 15 4 C -0.27 -4.38 9.02 -39.37 -0.35 -4.73 15 5 C 0.13 2.32 7.30 -39.44 -0.29 2.03 15 6 F -0.15 -2.49 17.27 2.25 0.04 -2.45 15 7 C -0.19 -3.64 9.68 -39.49 -0.38 -4.02 15 8 C 0.04 0.73 5.07 -104.65 -0.53 0.20 15 9 C 0.01 0.32 4.17 -29.03 -0.12 0.20 15 10 C -0.52 -14.43 9.65 -34.44 -0.33 -14.76 15 11 H 0.08 2.31 7.98 -52.49 -0.42 1.90 15 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 13 N -0.90 -27.16 13.96 55.43 0.77 -26.39 15 14 Si 0.88 20.91 27.47 -169.99 -4.67 16.25 15 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 17 H -0.26 -5.96 6.54 56.52 0.37 -5.59 15 18 C -0.16 -3.10 9.64 -39.42 -0.38 -3.48 15 19 H 0.05 0.49 7.66 -51.93 -0.40 0.09 15 20 H 0.10 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.05 0.53 7.66 -51.93 -0.40 0.13 15 22 H 0.13 1.75 6.30 -52.48 -0.33 1.42 15 23 H 0.13 2.51 8.06 -52.49 -0.42 2.08 15 24 H 0.04 0.80 7.14 -51.93 -0.37 0.43 15 25 H 0.03 0.67 7.51 -51.93 -0.39 0.28 15 26 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 27 H 0.14 2.54 8.06 -52.49 -0.42 2.11 15 LS Contribution 243.25 15.07 3.67 3.67 Total: -1.00 -30.18 243.25 -4.89 -35.07 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -2.74 Total: -2.07 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.76 Total: -19.04 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.77 Total: -26.39 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.18 -4.89 -35.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306938277.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.968 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds