Wall clock time and date at job start Sun Mar 29 2020 21:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 116.99973 * 2 1 4 4 C 1.38713 * 120.04439 * 359.97438 * 3 2 1 5 5 C 1.38345 * 119.91932 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.99593 * 179.97438 * 5 4 3 7 7 C 1.38512 * 120.00832 * 0.02562 * 5 4 3 8 8 C 1.38209 * 120.08309 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.96160 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47086 * 89.99860 * 9 8 7 11 11 H 1.08001 * 120.00098 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99844 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99790 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00042 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46945 * 90.00092 * 14 12 10 16 16 H 1.48496 * 109.46720 * 209.99907 * 14 12 10 17 17 H 1.48503 * 109.47089 * 330.00048 * 14 12 10 18 18 C 1.38180 * 120.08200 * 359.97438 * 8 7 5 19 19 H 1.08999 * 109.47051 * 60.00416 * 1 2 3 20 20 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47485 * 300.00226 * 1 2 3 22 22 H 1.08003 * 120.03903 * 0.27493 * 4 3 2 23 23 H 1.08000 * 119.96166 * 179.97438 * 7 5 4 24 24 H 1.08993 * 109.47553 * 210.00214 * 9 8 7 25 25 H 1.09004 * 109.46761 * 330.00028 * 9 8 7 26 26 H 0.97004 * 120.00088 * 179.97438 * 13 12 10 27 27 H 1.07999 * 120.00105 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3747 -0.0005 5 6 1.9221 3.6060 -0.0011 6 9 1.1887 4.7406 -0.0021 7 6 3.3054 3.6757 -0.0016 8 6 4.0575 2.5161 -0.0011 9 6 5.5624 2.5951 -0.0011 10 6 6.0641 2.6221 1.4198 11 1 5.3632 2.5853 2.2407 12 6 7.4178 2.6939 1.6717 13 7 7.8555 2.7169 2.9116 14 14 8.6300 2.7568 0.2518 15 1 8.8773 4.1716 -0.1254 16 1 9.9084 2.1237 0.6641 17 1 8.0679 2.0252 -0.9118 18 6 3.4312 1.2844 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 0.2127 2.3198 0.0035 23 1 3.7971 4.6373 -0.0024 24 1 5.9720 1.7253 -0.5145 25 1 5.8786 3.5028 -0.5153 26 1 8.8079 2.7670 3.0889 27 1 4.0202 0.3792 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306938277.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:28 Heat of formation + Delta-G solvation = -86.706653 kcal Electronic energy + Delta-G solvation = -13180.962608 eV Core-core repulsion = 10624.615128 eV Total energy + Delta-G solvation = -2556.347480 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.94854 -41.04990 -38.58509 -35.23392 -33.12588 -31.25789 -29.54255 -28.02858 -24.96343 -23.57024 -22.01786 -18.98885 -18.97348 -17.91491 -17.15952 -16.89811 -16.79469 -16.33132 -16.30350 -15.44960 -14.98156 -14.32241 -14.19428 -13.59346 -13.32272 -13.13556 -12.86047 -12.39843 -12.27951 -12.19211 -11.81126 -11.70504 -11.49137 -10.78376 -9.65405 -9.24466 -8.29371 -6.35740 0.18375 0.33639 1.39908 1.41581 1.53330 2.28011 2.36898 2.62806 3.04805 3.21529 3.78410 3.98954 4.06385 4.33032 4.41357 4.42613 4.56258 4.74071 4.91087 5.03013 5.04634 5.13912 5.21329 5.53146 5.68980 5.80475 6.24031 6.37913 6.70253 7.27727 8.87147 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.037013 B = 0.008294 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.299465 B = 3375.265328 C = 3769.637328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.157 3.843 4 C -0.254 4.254 5 C 0.130 3.870 6 F -0.140 7.140 7 C -0.202 4.202 8 C 0.011 3.989 9 C 0.019 3.981 10 C -0.524 4.524 11 H 0.029 0.971 12 C 0.010 3.990 13 N -0.948 5.948 14 Si 0.951 3.049 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.241 1.241 18 C -0.176 4.176 19 H 0.070 0.930 20 H 0.125 0.875 21 H 0.063 0.937 22 H 0.166 0.834 23 H 0.133 0.867 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.268 0.732 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 -2.795 -9.207 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.111 3.889 4 C -0.273 4.273 5 C 0.111 3.889 6 F -0.118 7.118 7 C -0.221 4.221 8 C 0.011 3.989 9 C -0.018 4.018 10 C -0.562 4.562 11 H 0.047 0.953 12 C -0.188 4.188 13 N -0.589 5.589 14 Si 0.774 3.226 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.164 1.164 18 C -0.195 4.195 19 H 0.088 0.912 20 H 0.143 0.857 21 H 0.082 0.918 22 H 0.184 0.816 23 H 0.151 0.849 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.269 -2.946 -9.102 16.358 hybrid contribution 0.464 0.510 0.156 0.707 sum -12.805 -2.437 -8.946 15.809 Atomic orbital electron populations 1.23442 0.76055 1.05992 1.02505 1.86091 1.23878 1.25715 1.88307 1.18620 0.91447 0.84455 0.94374 1.21159 1.01907 0.90131 1.14131 1.17367 0.88702 0.81911 1.00963 1.91462 1.77154 1.49344 1.93887 1.21028 0.92070 1.00077 1.08969 1.19735 0.96704 0.91594 0.90915 1.18736 0.88398 0.98598 0.96114 1.21096 0.92402 1.51202 0.91490 0.95298 1.25977 1.00418 0.93777 0.98594 1.70054 1.15392 1.51894 1.21510 0.85645 0.77693 0.79524 0.79776 1.18948 1.20940 1.16430 1.20473 0.91973 0.98524 1.08505 0.91159 0.85689 0.91808 0.81644 0.84865 0.93921 0.94161 0.92268 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 15 2 O -0.33 -9.18 10.50 -92.32 -0.97 -10.15 15 3 C 0.16 5.14 6.69 22.50 0.15 5.29 15 4 C -0.25 -7.58 9.02 22.41 0.20 -7.38 15 5 C 0.13 4.41 7.30 22.36 0.16 4.57 15 6 F -0.14 -4.49 17.27 44.97 0.78 -3.72 15 7 C -0.20 -7.81 9.68 22.33 0.22 -7.59 15 8 C 0.01 0.45 5.07 -19.89 -0.10 0.35 15 9 C 0.02 0.87 4.17 29.10 0.12 0.99 15 10 C -0.52 -30.14 9.65 25.60 0.25 -29.89 15 11 H 0.03 1.87 7.98 -2.91 -0.02 1.84 15 12 C 0.01 0.56 5.47 84.66 0.46 1.02 15 13 N -0.95 -59.19 13.96 21.45 0.30 -58.90 15 14 Si 0.95 43.01 27.47 68.60 1.88 44.89 15 15 H -0.26 -11.46 7.11 99.48 0.71 -10.76 15 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 17 H -0.24 -9.95 6.54 99.48 0.65 -9.30 15 18 C -0.18 -6.76 9.64 22.37 0.22 -6.54 15 19 H 0.07 0.99 7.66 -2.39 -0.02 0.97 15 20 H 0.12 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.06 0.99 7.66 -2.39 -0.02 0.97 15 22 H 0.17 3.71 6.30 -2.91 -0.02 3.69 15 23 H 0.13 5.01 8.06 -2.91 -0.02 4.99 15 24 H 0.04 1.90 7.14 -2.39 -0.02 1.89 15 25 H 0.04 1.78 7.51 -2.39 -0.02 1.76 15 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 27 H 0.13 5.00 8.06 -2.91 -0.02 4.97 15 Total: -1.00 -66.32 243.25 5.90 -60.42 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.11 Total: 5.28 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 2.79 Total: -37.83 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.90 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.97 Total: -10.15 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -66.32 5.90 -60.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306938277.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.286 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds