Wall clock time and date at job start Sun Mar 29 2020 21:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30843 * 125.89978 * 2 1 4 4 N 1.40080 * 108.20612 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03517 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47289 * 305.02520 * 5 4 3 7 7 H 1.07994 * 119.99399 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00144 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47181 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46716 * 120.00463 * 10 8 6 13 13 H 1.48500 * 109.46999 * 240.00161 * 10 8 6 14 14 C 1.34946 * 107.92925 * 0.26393 * 4 3 2 15 15 C 1.35319 * 107.73997 * 359.57823 * 14 4 3 16 16 N 1.48028 * 126.03698 * 180.16561 * 15 14 4 17 17 O 1.21798 * 119.99756 * 0.30322 * 16 15 14 18 18 O 1.21797 * 119.99578 * 180.30503 * 16 15 14 19 19 H 1.08996 * 109.47254 * 89.97128 * 1 2 3 20 20 H 1.08996 * 109.46699 * 209.97676 * 1 2 3 21 21 H 1.09001 * 109.46922 * 329.97169 * 1 2 3 22 22 H 1.09001 * 109.47060 * 65.02970 * 5 4 3 23 23 H 1.09004 * 109.47073 * 185.02459 * 5 4 3 24 24 H 0.96997 * 119.99752 * 179.97438 * 9 8 6 25 25 H 1.07992 * 126.13279 * 179.73672 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 4.7120 2.4554 -1.1650 7 1 3.8669 2.4201 -1.8364 8 6 5.7190 3.3742 -1.3715 9 7 6.7478 3.4173 -0.5534 10 14 5.6226 4.5568 -2.8143 11 1 4.3745 4.3050 -3.5783 12 1 5.6206 5.9535 -2.3101 13 1 6.7961 4.3523 -3.7011 14 6 3.6143 -0.7153 -0.0069 15 6 2.3272 -1.1329 -0.0007 16 7 1.8683 -2.5403 -0.0008 17 8 2.6824 -3.4462 -0.0013 18 8 0.6767 -2.7922 -0.0004 19 1 -0.3633 0.0005 -1.0276 20 1 -0.3632 -0.8902 0.5135 21 1 -0.3633 0.8897 0.5143 22 1 4.8267 2.0657 0.9302 23 1 5.6885 0.8904 -0.0917 24 1 7.4564 4.0635 -0.6990 25 1 4.4891 -1.3485 -0.0129 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306962952.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:33 Heat of formation + Delta-G solvation = 57.261249 kcal Electronic energy + Delta-G solvation = -13433.186314 eV Core-core repulsion = 10837.575801 eV Total energy + Delta-G solvation = -2595.610513 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.93097 -40.79359 -36.10716 -34.39110 -32.67415 -30.89880 -29.31111 -27.13923 -25.24904 -22.90541 -21.15335 -20.30648 -18.27926 -17.93933 -17.17869 -16.74133 -15.76853 -14.86359 -14.65714 -13.91939 -13.15152 -13.02601 -12.39473 -12.14698 -12.04227 -11.37119 -11.17264 -11.09158 -10.94199 -10.75031 -10.54828 -10.33412 -9.99176 -9.27428 -8.96083 -8.67836 -6.51487 -4.59287 0.74019 1.80866 2.04650 2.69507 2.94833 3.08025 3.16586 3.22870 4.09958 4.58547 4.62475 4.86302 5.19124 5.33745 5.72524 5.79995 5.89999 6.21165 6.51830 6.64182 6.89588 7.08924 7.42084 7.51175 7.78786 8.17779 8.47085 9.08809 10.57708 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.051268 B = 0.007437 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.015363 B = 3764.031930 C = 4028.943444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.112 3.888 3 N -0.256 5.256 4 N -0.295 5.295 5 C 0.249 3.751 6 C -0.542 4.542 7 H 0.073 0.927 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.913 3.087 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.141 3.859 15 C -0.213 4.213 16 N 0.083 4.917 17 O -0.197 6.197 18 O -0.185 6.185 19 H 0.083 0.917 20 H 0.093 0.907 21 H 0.078 0.922 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.271 0.729 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -5.132 1.056 7.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 N -0.079 5.079 4 N -0.071 5.071 5 C 0.133 3.867 6 C -0.580 4.580 7 H 0.091 0.909 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.740 3.260 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.205 1.205 14 C -0.019 4.019 15 C -0.313 4.313 16 N 0.593 4.407 17 O -0.405 6.405 18 O -0.395 6.395 19 H 0.101 0.899 20 H 0.111 0.889 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.355 -2.981 1.106 6.228 hybrid contribution 0.200 -0.552 -0.718 0.928 sum -5.155 -3.533 0.388 6.261 Atomic orbital electron populations 1.20408 0.85267 1.04336 1.03881 1.22368 0.98018 0.87644 0.97651 1.77785 0.86868 1.20512 1.22766 1.49857 1.07427 1.03807 1.45964 1.20211 0.76613 0.89230 1.00636 1.21171 1.07963 1.17652 1.11187 0.90924 1.24940 0.94513 0.97054 0.97184 1.69907 1.09609 1.36210 1.36925 0.86180 0.78430 0.80173 0.81258 1.19405 1.20403 1.20482 1.22347 0.97671 0.87134 0.94741 1.20865 0.94334 0.82094 1.33969 1.42458 1.00214 1.01861 0.96150 1.94495 1.50937 1.39176 1.55848 1.94440 1.00200 1.89641 1.55237 0.89861 0.88857 0.90277 0.92212 0.91569 0.91916 0.78678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.89 36.01 0.36 -0.75 15 2 C 0.11 2.01 7.22 -82.40 -0.59 1.41 15 3 N -0.26 -5.30 12.41 33.67 0.42 -4.88 15 4 N -0.30 -6.05 3.67 -62.54 -0.23 -6.28 15 5 C 0.25 5.63 6.26 -5.19 -0.03 5.59 15 6 C -0.54 -13.82 9.24 -34.44 -0.32 -14.14 15 7 H 0.07 1.93 7.81 -52.49 -0.41 1.52 15 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 15 9 N -0.89 -23.44 13.29 55.43 0.74 -22.71 15 10 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 15 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 14 C 0.14 2.48 11.13 -17.22 -0.19 2.29 15 15 C -0.21 -3.86 7.11 -80.37 -0.57 -4.43 15 16 N 0.08 1.51 4.45 33.75 0.15 1.66 15 17 O -0.20 -3.61 19.02 -29.46 -0.56 -4.17 15 18 O -0.18 -3.27 16.95 -29.46 -0.50 -3.77 15 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.09 1.21 6.47 -51.93 -0.34 0.88 15 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.06 1.42 8.14 -51.93 -0.42 0.99 15 23 H 0.07 1.44 8.07 -51.93 -0.42 1.02 15 24 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 25 H 0.20 2.77 8.06 -52.49 -0.42 2.35 15 LS Contribution 240.10 15.07 3.62 3.62 Total: -1.00 -27.58 240.10 -4.83 -32.41 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -1.99 Total: -2.52 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.45 Total: -8.39 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.08 Total: -32.21 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -1.06 Total: -7.94 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.58 -4.83 -32.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306962952.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.667 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds