Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47331 * 2 1 4 4 C 1.50703 * 109.47194 * 239.99929 * 2 1 3 5 5 N 1.30513 * 126.34651 * 285.00396 * 4 2 1 6 6 N 1.28594 * 109.67285 * 179.72854 * 5 4 2 7 7 C 1.30524 * 109.67381 * 0.43919 * 6 5 4 8 8 N 1.35493 * 107.30306 * 359.56964 * 7 6 5 9 9 C 1.46499 * 126.97887 * 180.26110 * 8 7 6 10 10 N 1.46501 * 109.47468 * 120.00080 * 2 1 3 11 11 C 1.46502 * 119.99924 * 59.99838 * 10 2 1 12 12 C 1.36941 * 119.99818 * 240.00143 * 10 2 1 13 13 H 1.07998 * 119.99880 * 23.55984 * 12 10 2 14 14 C 1.38811 * 119.99508 * 203.55957 * 12 10 2 15 15 N 1.31614 * 120.00413 * 11.40154 * 14 12 10 16 16 Si 1.86807 * 119.99600 * 191.40461 * 14 12 10 17 17 H 1.48499 * 109.46933 * 60.00145 * 16 14 12 18 18 H 1.48494 * 109.46957 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46964 * 299.99914 * 16 14 12 20 20 H 1.08993 * 109.47508 * 59.99830 * 1 2 3 21 21 H 1.09004 * 109.46654 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46963 * 299.99658 * 1 2 3 23 23 H 1.08001 * 126.34586 * 179.82424 * 7 6 5 24 24 H 1.08997 * 109.47223 * 90.02271 * 9 8 7 25 25 H 1.09000 * 109.46944 * 210.02302 * 9 8 7 26 26 H 1.09000 * 109.47138 * 330.02292 * 9 8 7 27 27 H 1.08995 * 109.46809 * 94.41964 * 11 10 2 28 28 H 1.09001 * 109.46875 * 214.41716 * 11 10 2 29 29 H 1.08999 * 109.47318 * 334.41243 * 11 10 2 30 30 H 0.97001 * 119.99982 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 2.0336 -1.9998 -1.4329 6 7 2.5291 -2.2556 -2.5917 7 6 2.8750 -1.1416 -3.1773 8 7 2.5663 -0.1290 -2.3317 9 6 2.7685 1.3037 -2.5615 10 7 2.0184 -0.6906 1.1961 11 6 1.6645 -2.0932 1.4280 12 6 2.8057 -0.0250 2.0975 13 1 2.7654 1.0525 2.1574 14 6 3.6555 -0.7355 2.9342 15 7 3.8754 -2.0147 2.7165 16 14 4.4869 0.1242 4.3692 17 1 3.4535 0.6688 5.2860 18 1 5.3366 -0.8475 5.1033 19 1 5.3310 1.2344 3.8593 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.3206 -1.0447 -4.1563 24 1 1.8827 1.7240 -3.0375 25 1 2.9407 1.8038 -1.6083 26 1 3.6329 1.4493 -3.2094 27 1 2.4548 -2.7361 1.0405 28 1 1.5471 -2.2662 2.4977 29 1 0.7283 -2.3208 0.9183 30 1 4.4695 -2.5111 3.3010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306971819.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = 108.230766 kcal Electronic energy + Delta-G solvation = -14327.555244 eV Core-core repulsion = 11967.706692 eV Total energy + Delta-G solvation = -2359.848552 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.38268 -36.20721 -34.48275 -32.42445 -29.71062 -28.53994 -27.22245 -25.91869 -23.89956 -21.80047 -21.58393 -19.12450 -16.79041 -16.55732 -15.75736 -15.11607 -14.50217 -14.03124 -13.67655 -13.22272 -12.79398 -12.72517 -12.27179 -11.71181 -11.34102 -10.93593 -10.82264 -10.70888 -10.55312 -10.31694 -9.92586 -9.83885 -9.61655 -9.55174 -8.59328 -8.44045 -6.80647 -5.72173 -3.23318 2.46558 3.02776 3.36051 3.41578 3.43036 3.65563 4.45303 4.84953 5.00914 5.07552 5.18743 5.43008 5.43782 5.48000 5.77788 6.02931 6.07656 6.21962 6.45160 6.58691 6.75207 6.92963 7.12556 7.46989 7.54202 7.77852 8.09228 8.38066 9.20771 9.49024 9.82189 10.33129 11.29340 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.010179 C = 0.010008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.080475 B = 2749.973219 C = 2797.044351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.249 3.751 3 H 0.075 0.925 4 C 0.188 3.812 5 N -0.286 5.286 6 N -0.306 5.306 7 C 0.117 3.883 8 N -0.484 5.484 9 C 0.077 3.923 10 N -0.575 5.575 11 C 0.169 3.831 12 C -0.270 4.270 13 H 0.069 0.931 14 C 0.009 3.991 15 N -0.893 5.893 16 Si 0.907 3.093 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 H 0.042 0.958 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.206 0.794 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.007 0.993 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 7.904 -9.011 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.093 0.907 4 C -0.082 4.082 5 N -0.125 5.125 6 N -0.145 5.145 7 C -0.171 4.171 8 N -0.177 5.177 9 C -0.067 4.067 10 N -0.295 5.295 11 C 0.025 3.975 12 C -0.400 4.400 13 H 0.087 0.913 14 C -0.191 4.191 15 N -0.535 5.535 16 Si 0.736 3.264 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.210 1.210 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.223 0.777 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.026 0.974 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.447 6.256 -8.633 11.205 hybrid contribution 1.098 1.785 0.277 2.114 sum -2.349 8.042 -8.356 11.832 Atomic orbital electron populations 1.22193 0.96143 1.02419 1.00517 1.19001 0.92857 0.94049 0.80512 0.90709 1.27175 0.98699 0.91614 0.90717 1.74272 1.18469 1.11391 1.08372 1.74186 1.14294 1.23208 1.02813 1.26175 1.06959 0.84545 0.99413 1.46422 1.47429 1.08674 1.15155 1.21966 1.02670 0.77963 1.04094 1.44075 1.57438 1.10742 1.17267 1.20786 0.95321 0.83471 0.97920 1.19178 1.17272 0.91305 1.12249 0.91321 1.25161 0.97331 0.96201 1.00403 1.70116 1.37834 1.07493 1.38074 0.86321 0.79174 0.78477 0.82406 1.20809 1.21530 1.20966 0.93945 0.92006 0.91633 0.77739 0.90608 0.89084 0.89775 0.94215 0.94378 0.97438 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.16 37.16 0.34 -2.36 16 2 C 0.25 5.17 3.11 -69.08 -0.21 4.96 16 3 H 0.07 1.42 6.63 -51.93 -0.34 1.08 16 4 C 0.19 3.96 6.80 -154.99 -1.05 2.91 16 5 N -0.29 -6.83 10.66 32.80 0.35 -6.48 16 6 N -0.31 -6.66 12.21 29.69 0.36 -6.30 16 7 C 0.12 1.96 12.74 -89.94 -1.15 0.82 16 8 N -0.48 -8.10 3.15 -122.69 -0.39 -8.49 16 9 C 0.08 0.83 11.00 59.85 0.66 1.49 16 10 N -0.58 -14.75 2.80 -174.81 -0.49 -15.24 16 11 C 0.17 4.49 7.39 59.85 0.44 4.93 16 12 C -0.27 -7.38 9.58 -15.06 -0.14 -7.52 16 13 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 14 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 15 N -0.89 -26.77 10.66 55.49 0.59 -26.18 16 16 Si 0.91 21.69 29.57 -169.99 -5.03 16.66 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.06 1.17 6.66 -51.93 -0.35 0.83 16 22 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.21 2.34 8.06 -52.49 -0.42 1.92 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 1.01 7.06 -51.93 -0.37 0.65 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 1.19 7.14 -51.93 -0.37 0.82 16 28 H 0.04 1.06 7.29 -51.93 -0.38 0.68 16 29 H 0.01 0.17 6.41 -51.93 -0.33 -0.16 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 253.23 15.07 3.82 3.82 Total: -1.00 -34.48 253.23 -5.79 -40.26 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -3.80 Total: -3.46 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -1.21 Total: 5.41 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.43 Total: -62.69 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -34.48 -5.79 -40.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971819.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.494 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds