Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47331 * 2 1 4 4 C 1.50703 * 109.47194 * 239.99929 * 2 1 3 5 5 N 1.30513 * 126.34651 * 285.00396 * 4 2 1 6 6 N 1.28594 * 109.67285 * 179.72854 * 5 4 2 7 7 C 1.30524 * 109.67381 * 0.43919 * 6 5 4 8 8 N 1.35493 * 107.30306 * 359.56964 * 7 6 5 9 9 C 1.46499 * 126.97887 * 180.26110 * 8 7 6 10 10 N 1.46501 * 109.47468 * 120.00080 * 2 1 3 11 11 C 1.46502 * 119.99924 * 59.99838 * 10 2 1 12 12 C 1.36941 * 119.99818 * 240.00143 * 10 2 1 13 13 H 1.07998 * 119.99880 * 23.55984 * 12 10 2 14 14 C 1.38811 * 119.99508 * 203.55957 * 12 10 2 15 15 N 1.31614 * 120.00413 * 11.40154 * 14 12 10 16 16 Si 1.86807 * 119.99600 * 191.40461 * 14 12 10 17 17 H 1.48499 * 109.46933 * 60.00145 * 16 14 12 18 18 H 1.48494 * 109.46957 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46964 * 299.99914 * 16 14 12 20 20 H 1.08993 * 109.47508 * 59.99830 * 1 2 3 21 21 H 1.09004 * 109.46654 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46963 * 299.99658 * 1 2 3 23 23 H 1.08001 * 126.34586 * 179.82424 * 7 6 5 24 24 H 1.08997 * 109.47223 * 90.02271 * 9 8 7 25 25 H 1.09000 * 109.46944 * 210.02302 * 9 8 7 26 26 H 1.09000 * 109.47138 * 330.02292 * 9 8 7 27 27 H 1.08995 * 109.46809 * 94.41964 * 11 10 2 28 28 H 1.09001 * 109.46875 * 214.41716 * 11 10 2 29 29 H 1.08999 * 109.47318 * 334.41243 * 11 10 2 30 30 H 0.97001 * 119.99982 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 2.0336 -1.9998 -1.4329 6 7 2.5291 -2.2556 -2.5917 7 6 2.8750 -1.1416 -3.1773 8 7 2.5663 -0.1290 -2.3317 9 6 2.7685 1.3037 -2.5615 10 7 2.0184 -0.6906 1.1961 11 6 1.6645 -2.0932 1.4280 12 6 2.8057 -0.0250 2.0975 13 1 2.7654 1.0525 2.1574 14 6 3.6555 -0.7355 2.9342 15 7 3.8754 -2.0147 2.7165 16 14 4.4869 0.1242 4.3692 17 1 3.4535 0.6688 5.2860 18 1 5.3366 -0.8475 5.1033 19 1 5.3310 1.2344 3.8593 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.3206 -1.0447 -4.1563 24 1 1.8827 1.7240 -3.0375 25 1 2.9407 1.8038 -1.6083 26 1 3.6329 1.4493 -3.2094 27 1 2.4548 -2.7361 1.0405 28 1 1.5471 -2.2662 2.4977 29 1 0.7283 -2.3208 0.9183 30 1 4.4695 -2.5111 3.3010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306971819.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = 85.741203 kcal Electronic energy + Delta-G solvation = -14328.530465 eV Core-core repulsion = 11967.706692 eV Total energy + Delta-G solvation = -2360.823773 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.84093 -38.04643 -35.80806 -34.30522 -31.54008 -30.11472 -28.28160 -28.01757 -25.64760 -23.55302 -22.99551 -20.71539 -18.79624 -17.87442 -17.13944 -16.97735 -15.98419 -15.66600 -15.36219 -14.77742 -14.27548 -14.02693 -13.58824 -13.48281 -12.97119 -12.66613 -12.61033 -12.51474 -12.30492 -12.23110 -11.85669 -11.73499 -11.07836 -10.88970 -10.65496 -10.02984 -8.87877 -7.81701 -5.36412 1.07946 1.46423 1.50393 1.56960 1.82191 2.11951 2.50298 3.29569 3.55714 3.72805 3.91024 3.98518 4.16663 4.47119 4.50581 4.68613 4.72906 4.81851 4.97300 5.08421 5.17061 5.28259 5.39896 5.48996 5.64186 5.86975 6.20023 6.29573 7.10652 7.80112 8.00156 8.29485 9.19995 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.010179 C = 0.010008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.080475 B = 2749.973219 C = 2797.044351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.245 3.755 3 H 0.095 0.905 4 C 0.170 3.830 5 N -0.337 5.337 6 N -0.361 5.361 7 C 0.145 3.855 8 N -0.478 5.478 9 C 0.066 3.934 10 N -0.594 5.594 11 C 0.198 3.802 12 C -0.273 4.273 13 H 0.086 0.914 14 C -0.053 4.053 15 N -0.937 5.937 16 Si 0.976 3.024 17 H -0.272 1.272 18 H -0.301 1.301 19 H -0.270 1.270 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.072 0.928 23 H 0.261 0.739 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.117 0.883 27 H -0.002 1.002 28 H 0.012 0.988 29 H 0.021 0.979 30 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 10.804 -10.517 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.134 3.866 3 H 0.113 0.887 4 C -0.102 4.102 5 N -0.176 5.176 6 N -0.200 5.200 7 C -0.144 4.144 8 N -0.170 5.170 9 C -0.075 4.075 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.403 4.403 13 H 0.104 0.896 14 C -0.249 4.249 15 N -0.583 5.583 16 Si 0.803 3.197 17 H -0.198 1.198 18 H -0.227 1.227 19 H -0.196 1.196 20 H 0.095 0.905 21 H 0.060 0.940 22 H 0.091 0.909 23 H 0.277 0.723 24 H 0.125 0.875 25 H 0.106 0.894 26 H 0.135 0.865 27 H 0.016 0.984 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.505 9.224 -10.179 14.176 hybrid contribution 1.073 0.975 0.548 1.550 sum -2.432 10.199 -9.631 14.237 Atomic orbital electron populations 1.22064 0.93728 1.01721 1.02537 1.19222 0.94376 0.94153 0.78822 0.88695 1.26774 0.99859 0.91279 0.92267 1.74150 1.20162 1.13422 1.09853 1.74067 1.16917 1.25992 1.03035 1.27143 1.03694 0.83209 1.00356 1.46617 1.45790 1.10961 1.13628 1.22448 1.05732 0.74343 1.04998 1.44192 1.57605 1.10105 1.19569 1.20284 0.94350 0.84208 0.95884 1.19673 1.16130 0.92137 1.12311 0.89595 1.26026 0.98676 0.96810 1.03394 1.70338 1.39308 1.09331 1.39293 0.85221 0.78111 0.77252 0.79084 1.19779 1.22733 1.19572 0.90524 0.94025 0.90929 0.72324 0.87483 0.89447 0.86476 0.98401 0.96935 0.96053 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.16 71.98 0.66 -4.04 16 2 C 0.25 9.83 3.11 44.25 0.14 9.97 16 3 H 0.10 3.35 6.63 -2.39 -0.02 3.34 16 4 C 0.17 6.97 6.80 137.98 0.94 7.90 16 5 N -0.34 -16.26 10.66 -50.16 -0.53 -16.79 16 6 N -0.36 -15.58 12.21 -59.99 -0.73 -16.31 16 7 C 0.14 4.44 12.74 180.11 2.30 6.74 16 8 N -0.48 -14.52 3.15 -542.08 -1.71 -16.23 16 9 C 0.07 1.11 11.00 127.77 1.41 2.52 16 10 N -0.59 -30.57 2.80 -706.98 -1.98 -32.55 16 11 C 0.20 10.94 7.39 127.77 0.94 11.89 16 12 C -0.27 -14.78 9.58 84.03 0.81 -13.98 16 13 H 0.09 4.26 7.82 -2.91 -0.02 4.23 16 14 C -0.05 -3.03 5.13 84.86 0.44 -2.60 16 15 N -0.94 -58.37 10.66 21.65 0.23 -58.14 16 16 Si 0.98 44.89 29.57 68.60 2.03 46.92 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.04 1.55 6.66 -2.39 -0.02 1.53 16 22 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.26 4.59 8.06 -2.91 -0.02 4.57 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 1.59 7.06 -2.39 -0.02 1.58 16 26 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.00 -0.15 7.14 -2.39 -0.02 -0.17 16 28 H 0.01 0.71 7.29 -2.39 -0.02 0.69 16 29 H 0.02 1.08 6.41 -2.39 -0.02 1.06 16 30 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -78.80 253.23 6.05 -72.75 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.13 Total: 1.96 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 7.62 Total: 18.40 kcal Atomic # 7 Polarization: -135.30 SS G_CDS: -4.72 Total: -140.02 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -78.80 6.05 -72.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971819.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.490 kcal (2) G-P(sol) polarization free energy of solvation -78.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds