Wall clock time and date at job start Sun Mar 29 2020 21:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46782 * 119.99431 * 2 1 3 5 5 N 1.30518 * 126.34520 * 74.69825 * 4 2 1 6 6 N 1.28599 * 109.67208 * 179.82117 * 5 4 2 7 7 C 1.30525 * 109.67132 * 0.44258 * 6 5 4 8 8 N 1.35491 * 107.30528 * 359.73417 * 7 6 5 9 9 C 1.46501 * 126.97780 * 179.97438 * 8 7 6 10 10 N 1.46492 * 109.47380 * 239.99611 * 2 1 3 11 11 C 1.46505 * 120.00097 * 299.99770 * 10 2 1 12 12 C 1.36938 * 120.00046 * 120.00228 * 10 2 1 13 13 H 1.07996 * 120.00061 * 39.07036 * 12 10 2 14 14 C 1.38813 * 119.99732 * 219.07487 * 12 10 2 15 15 N 1.31617 * 120.00096 * 26.25679 * 14 12 10 16 16 Si 1.86803 * 119.99808 * 205.97465 * 14 12 10 17 17 H 1.48498 * 109.46754 * 60.00440 * 16 14 12 18 18 H 1.48498 * 109.46894 * 180.02562 * 16 14 12 19 19 H 1.48489 * 109.47388 * 300.00408 * 16 14 12 20 20 H 1.08998 * 109.46732 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47239 * 300.00320 * 1 2 3 22 22 H 1.09002 * 109.47032 * 60.00787 * 1 2 3 23 23 H 1.07999 * 126.34213 * 179.72822 * 7 6 5 24 24 H 1.08995 * 109.47282 * 269.99821 * 9 8 7 25 25 H 1.09010 * 109.47184 * 29.99917 * 9 8 7 26 26 H 1.08999 * 109.46899 * 149.99652 * 9 8 7 27 27 H 1.08998 * 109.47023 * 275.26807 * 11 10 2 28 28 H 1.09002 * 109.46727 * 35.27093 * 11 10 2 29 29 H 1.09005 * 109.46897 * 155.26879 * 11 10 2 30 30 H 0.96996 * 120.00212 * 5.09828 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 2.0285 -1.9993 1.4354 6 7 2.5343 -2.2558 2.5896 7 6 2.8751 -1.1413 3.1774 8 7 2.5662 -0.1288 2.3317 9 6 2.7680 1.3039 2.5616 10 7 2.0184 -0.6906 -1.1960 11 6 1.6645 -2.0933 -1.4278 12 6 2.8057 -0.0252 -2.0974 13 1 3.5590 0.6660 -1.7495 14 6 2.6355 -0.2391 -3.4584 15 7 1.4673 -0.6299 -3.9221 16 14 4.0622 0.0351 -4.6326 17 1 5.1851 -0.8646 -4.2657 18 1 3.6245 -0.2594 -6.0207 19 1 4.5110 1.4479 -4.5448 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 3.3206 -1.0444 4.1564 24 1 1.8821 1.7239 3.0378 25 1 3.6324 1.4498 3.2095 26 1 2.9398 1.8041 1.6085 27 1 2.3628 -2.7373 -0.8932 28 1 0.6523 -2.2769 -1.0676 29 1 1.7152 -2.3092 -2.4950 30 1 0.7062 -0.6971 -3.3246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306971820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:25 Heat of formation + Delta-G solvation = 101.624420 kcal Electronic energy + Delta-G solvation = -14299.816138 eV Core-core repulsion = 11939.681113 eV Total energy + Delta-G solvation = -2360.135025 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.59244 -36.40879 -34.66936 -32.55997 -29.73180 -28.67578 -27.37949 -25.99082 -23.73268 -21.92335 -21.69851 -19.32645 -17.29246 -16.70852 -15.94318 -14.95456 -14.46605 -14.05361 -13.85290 -13.50360 -13.21463 -12.86786 -12.36181 -11.65486 -11.46948 -11.14113 -10.86685 -10.75400 -10.63730 -10.35425 -10.06006 -9.82842 -9.74281 -9.41774 -8.69402 -8.38078 -6.85896 -6.09156 -3.43711 2.27847 2.85452 3.42957 3.46328 3.52159 3.68945 4.54252 4.72094 4.84826 4.96288 5.07560 5.28386 5.33451 5.37446 5.68746 5.93814 5.99951 6.12902 6.33017 6.57863 6.59465 6.77956 6.90610 7.19518 7.29718 7.39041 8.04241 8.56125 9.07344 9.28400 9.76383 10.24309 11.11653 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.040861 B = 0.009677 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.087604 B = 2892.725420 C = 2994.242979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.078 0.922 4 C 0.192 3.808 5 N -0.290 5.290 6 N -0.306 5.306 7 C 0.121 3.879 8 N -0.482 5.482 9 C 0.075 3.925 10 N -0.578 5.578 11 C 0.124 3.876 12 C -0.367 4.367 13 H 0.047 0.953 14 C -0.010 4.010 15 N -0.896 5.896 16 Si 1.065 2.935 17 H -0.292 1.292 18 H -0.284 1.284 19 H -0.292 1.292 20 H 0.058 0.942 21 H 0.039 0.961 22 H 0.067 0.933 23 H 0.209 0.791 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.015 0.985 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 5.532 11.486 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.096 0.904 4 C -0.079 4.079 5 N -0.129 5.129 6 N -0.146 5.146 7 C -0.166 4.166 8 N -0.174 5.174 9 C -0.068 4.068 10 N -0.299 5.299 11 C -0.021 4.021 12 C -0.495 4.495 13 H 0.064 0.936 14 C -0.215 4.215 15 N -0.533 5.533 16 Si 0.894 3.106 17 H -0.219 1.219 18 H -0.209 1.209 19 H -0.218 1.218 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.226 0.774 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.405 3.915 9.618 10.479 hybrid contribution -0.058 1.593 2.180 2.701 sum 1.347 5.508 11.798 13.090 Atomic orbital electron populations 1.22203 0.96241 1.02202 1.00686 1.18858 0.92239 0.93544 0.81817 0.90354 1.26829 0.98391 0.91363 0.91267 1.74288 1.18343 1.11464 1.08800 1.74197 1.14268 1.23242 1.02860 1.26217 1.06606 0.84318 0.99469 1.46324 1.47147 1.08920 1.15031 1.22020 1.02922 0.77609 1.04289 1.43762 1.58370 1.07446 1.20331 1.21090 0.96339 0.84239 1.00416 1.19769 1.13372 1.28131 0.88277 0.93560 1.25999 1.01007 0.98491 0.95976 1.70752 0.99644 1.44908 1.38028 0.83547 0.74942 0.76011 0.76101 1.21859 1.20938 1.21841 0.92255 0.94167 0.91409 0.77445 0.90392 0.89547 0.88933 0.96679 0.95880 0.92106 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.14 37.16 0.34 -2.57 16 2 C 0.25 5.23 3.11 -69.09 -0.22 5.01 16 3 H 0.08 1.57 6.65 -51.93 -0.35 1.22 16 4 C 0.19 3.88 6.80 -154.99 -1.05 2.83 16 5 N -0.29 -6.55 10.38 32.80 0.34 -6.20 16 6 N -0.31 -6.24 12.21 29.69 0.36 -5.88 16 7 C 0.12 1.89 12.74 -89.94 -1.15 0.75 16 8 N -0.48 -7.62 3.15 -122.68 -0.39 -8.01 16 9 C 0.08 0.77 11.00 59.85 0.66 1.43 16 10 N -0.58 -14.78 2.45 -174.81 -0.43 -15.21 16 11 C 0.12 3.18 8.50 59.85 0.51 3.69 16 12 C -0.37 -10.17 9.27 -15.06 -0.14 -10.31 16 13 H 0.05 1.29 7.95 -52.49 -0.42 0.87 16 14 C -0.01 -0.27 4.74 -17.43 -0.08 -0.35 16 15 N -0.90 -26.45 12.35 55.49 0.69 -25.76 16 16 Si 1.06 25.03 29.99 -169.99 -5.10 19.94 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H 0.06 1.19 6.70 -51.93 -0.35 0.84 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 23 H 0.21 2.11 8.06 -52.49 -0.42 1.69 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.09 1.00 7.06 -51.93 -0.37 0.63 16 27 H 0.01 0.40 7.39 -51.93 -0.38 0.01 16 28 H 0.02 0.55 6.45 -51.93 -0.34 0.22 16 29 H 0.06 1.68 5.83 -51.93 -0.30 1.38 16 30 H 0.27 8.08 7.39 -40.82 -0.30 7.78 16 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -33.87 253.21 -5.55 -39.42 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.71 Total: -2.58 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.13 Total: 0.48 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.57 Total: -61.07 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.87 -5.55 -39.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.042 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds