Wall clock time and date at job start Sun Mar 29 2020 21:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46782 * 119.99431 * 2 1 3 5 5 N 1.30518 * 126.34520 * 74.69825 * 4 2 1 6 6 N 1.28599 * 109.67208 * 179.82117 * 5 4 2 7 7 C 1.30525 * 109.67132 * 0.44258 * 6 5 4 8 8 N 1.35491 * 107.30528 * 359.73417 * 7 6 5 9 9 C 1.46501 * 126.97780 * 179.97438 * 8 7 6 10 10 N 1.46492 * 109.47380 * 239.99611 * 2 1 3 11 11 C 1.46505 * 120.00097 * 299.99770 * 10 2 1 12 12 C 1.36938 * 120.00046 * 120.00228 * 10 2 1 13 13 H 1.07996 * 120.00061 * 39.07036 * 12 10 2 14 14 C 1.38813 * 119.99732 * 219.07487 * 12 10 2 15 15 N 1.31617 * 120.00096 * 26.25679 * 14 12 10 16 16 Si 1.86803 * 119.99808 * 205.97465 * 14 12 10 17 17 H 1.48498 * 109.46754 * 60.00440 * 16 14 12 18 18 H 1.48498 * 109.46894 * 180.02562 * 16 14 12 19 19 H 1.48489 * 109.47388 * 300.00408 * 16 14 12 20 20 H 1.08998 * 109.46732 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47239 * 300.00320 * 1 2 3 22 22 H 1.09002 * 109.47032 * 60.00787 * 1 2 3 23 23 H 1.07999 * 126.34213 * 179.72822 * 7 6 5 24 24 H 1.08995 * 109.47282 * 269.99821 * 9 8 7 25 25 H 1.09010 * 109.47184 * 29.99917 * 9 8 7 26 26 H 1.08999 * 109.46899 * 149.99652 * 9 8 7 27 27 H 1.08998 * 109.47023 * 275.26807 * 11 10 2 28 28 H 1.09002 * 109.46727 * 35.27093 * 11 10 2 29 29 H 1.09005 * 109.46897 * 155.26879 * 11 10 2 30 30 H 0.96996 * 120.00212 * 5.09828 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 2.0285 -1.9993 1.4354 6 7 2.5343 -2.2558 2.5896 7 6 2.8751 -1.1413 3.1774 8 7 2.5662 -0.1288 2.3317 9 6 2.7680 1.3039 2.5616 10 7 2.0184 -0.6906 -1.1960 11 6 1.6645 -2.0933 -1.4278 12 6 2.8057 -0.0252 -2.0974 13 1 3.5590 0.6660 -1.7495 14 6 2.6355 -0.2391 -3.4584 15 7 1.4673 -0.6299 -3.9221 16 14 4.0622 0.0351 -4.6326 17 1 5.1851 -0.8646 -4.2657 18 1 3.6245 -0.2594 -6.0207 19 1 4.5110 1.4479 -4.5448 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 3.3206 -1.0444 4.1564 24 1 1.8821 1.7239 3.0378 25 1 3.6324 1.4498 3.2095 26 1 2.9398 1.8041 1.6085 27 1 2.3628 -2.7373 -0.8932 28 1 0.6523 -2.2769 -1.0676 29 1 1.7152 -2.3092 -2.4950 30 1 0.7062 -0.6971 -3.3246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306971820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:24 Heat of formation + Delta-G solvation = 80.328060 kcal Electronic energy + Delta-G solvation = -14300.739617 eV Core-core repulsion = 11939.681113 eV Total energy + Delta-G solvation = -2361.058504 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.96796 -38.28089 -35.92123 -34.44556 -31.53379 -30.26120 -28.38195 -28.05423 -25.51206 -23.60740 -23.09221 -20.91929 -19.31102 -17.94908 -17.23750 -16.61903 -16.05094 -15.68882 -15.62181 -15.34139 -14.40671 -14.17753 -13.68318 -13.34833 -13.15285 -12.92938 -12.73599 -12.46883 -12.40951 -12.10009 -11.90415 -11.45598 -11.20654 -10.99983 -10.52264 -10.12353 -8.95900 -8.24488 -5.59918 0.96406 1.57530 1.65950 1.70600 1.85028 1.98897 2.62968 3.18930 3.39664 3.57853 3.82345 3.91053 4.06896 4.36949 4.41219 4.54940 4.63762 4.67972 4.80795 4.92836 5.01367 5.06523 5.15979 5.29627 5.36097 5.87667 6.08030 6.37163 7.02563 7.67520 7.87323 8.17770 8.92407 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.040861 B = 0.009677 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.087604 B = 2892.725420 C = 2994.242979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.247 3.753 3 H 0.089 0.911 4 C 0.172 3.828 5 N -0.334 5.334 6 N -0.358 5.358 7 C 0.152 3.848 8 N -0.476 5.476 9 C 0.065 3.935 10 N -0.594 5.594 11 C 0.144 3.856 12 C -0.373 4.373 13 H 0.044 0.956 14 C -0.057 4.057 15 N -0.921 5.921 16 Si 1.113 2.887 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.267 1.267 20 H 0.042 0.958 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.265 0.735 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.001 0.999 28 H 0.029 0.971 29 H 0.035 0.965 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 7.261 13.376 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.137 3.863 3 H 0.107 0.893 4 C -0.100 4.100 5 N -0.173 5.173 6 N -0.197 5.197 7 C -0.136 4.136 8 N -0.167 5.167 9 C -0.076 4.076 10 N -0.317 5.317 11 C -0.002 4.002 12 C -0.503 4.503 13 H 0.062 0.938 14 C -0.256 4.256 15 N -0.559 5.559 16 Si 0.936 3.064 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.193 1.193 20 H 0.061 0.939 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.281 0.719 24 H 0.123 0.877 25 H 0.142 0.858 26 H 0.103 0.897 27 H 0.019 0.981 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.449 5.686 11.556 13.110 hybrid contribution -0.357 1.099 1.778 2.120 sum 2.092 6.785 13.334 15.106 Atomic orbital electron populations 1.22048 0.94816 1.01432 1.01815 1.18933 0.93300 0.93605 0.80452 0.89348 1.26269 1.00112 0.91195 0.92432 1.74167 1.19743 1.13070 1.10336 1.74092 1.16729 1.25857 1.02977 1.27217 1.03226 0.82866 1.00306 1.46542 1.45575 1.11100 1.13476 1.22472 1.05932 0.74230 1.04970 1.43866 1.58901 1.07309 1.21585 1.20771 0.96286 0.84825 0.98303 1.19974 1.13623 1.27729 0.88935 0.93797 1.27313 1.02276 0.98123 0.97929 1.70863 1.00066 1.47145 1.37824 0.82911 0.72313 0.77264 0.73874 1.21349 1.21480 1.19258 0.93930 0.90604 0.92533 0.71904 0.87715 0.85830 0.89740 0.98117 0.95266 0.94673 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.14 71.98 0.66 -4.62 16 2 C 0.25 10.31 3.11 44.25 0.14 10.45 16 3 H 0.09 3.43 6.65 -2.39 -0.02 3.42 16 4 C 0.17 6.76 6.80 137.98 0.94 7.70 16 5 N -0.33 -15.05 10.38 -50.15 -0.52 -15.57 16 6 N -0.36 -14.16 12.21 -59.99 -0.73 -14.89 16 7 C 0.15 4.22 12.74 180.11 2.30 6.51 16 8 N -0.48 -13.54 3.15 -542.06 -1.71 -15.25 16 9 C 0.06 1.04 11.00 127.77 1.41 2.45 16 10 N -0.59 -30.79 2.45 -706.98 -1.73 -32.52 16 11 C 0.14 7.63 8.50 127.77 1.09 8.71 16 12 C -0.37 -20.81 9.27 84.03 0.78 -20.03 16 13 H 0.04 2.43 7.95 -2.91 -0.02 2.41 16 14 C -0.06 -3.20 4.74 84.86 0.40 -2.80 16 15 N -0.92 -55.43 12.35 21.65 0.27 -55.16 16 16 Si 1.11 50.41 29.99 68.60 2.06 52.46 16 17 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H 0.04 1.71 6.70 -2.39 -0.02 1.70 16 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.27 3.83 8.06 -2.91 -0.02 3.81 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.08 1.55 7.06 -2.39 -0.02 1.53 16 27 H 0.00 0.03 7.39 -2.39 -0.02 0.02 16 28 H 0.03 1.46 6.45 -2.39 -0.02 1.45 16 29 H 0.03 2.02 5.83 -2.38 -0.01 2.00 16 30 H 0.26 15.86 7.39 -92.71 -0.69 15.18 16 Total: -1.00 -75.70 253.21 6.55 -69.15 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.22 Total: 3.40 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 7.70 Total: 8.37 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -4.42 Total: -133.39 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.06 Total: 52.46 kcal Total: -75.70 6.55 -69.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.480 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds