Wall clock time and date at job start Sun Mar 29 2020 21:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 5 5 C 1.36936 * 120.00314 * 274.99849 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.50697 * 109.46954 * 239.99873 * 2 1 3 14 14 C 1.38629 * 120.79940 * 264.71856 * 13 2 1 15 15 C 1.38198 * 119.19110 * 179.80256 * 14 13 2 16 16 N 1.31878 * 120.81773 * 0.48176 * 15 14 13 17 17 C 1.31841 * 121.75386 * 359.74960 * 16 15 14 18 18 C 1.38466 * 120.72527 * 0.02562 * 17 16 15 19 19 F 1.35091 * 120.44409 * 180.02562 * 18 17 16 20 20 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 21 21 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 22 22 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 23 23 H 0.97000 * 120.00040 * 94.99981 * 4 2 1 24 24 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 25 25 H 1.07998 * 120.40666 * 0.02562 * 14 13 2 26 26 H 1.08001 * 119.59026 * 180.21075 * 15 14 13 27 27 H 1.07993 * 119.63850 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.7431 -0.0037 4.6414 9 14 3.0578 -2.4738 3.4249 10 1 1.8628 -3.2929 3.7507 11 1 3.5267 -2.8052 2.0554 12 1 4.1381 -2.7639 4.4016 13 6 2.0323 -0.7104 -1.2304 14 6 2.3723 -2.0536 -1.1855 15 6 2.8254 -2.6731 -2.3348 16 7 2.9453 -2.0001 -3.4626 17 6 2.6365 -0.7210 -3.5435 18 6 2.1715 -0.0339 -2.4349 19 9 1.8563 1.2766 -2.5243 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 2.2490 -1.6317 1.1527 24 1 3.0706 -0.4598 5.4323 25 1 2.2806 -2.6102 -0.2645 26 1 3.0888 -3.7201 -2.3079 27 1 2.7482 -0.2031 -4.4846 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307027350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:35 Heat of formation + Delta-G solvation = 4.447484 kcal Electronic energy + Delta-G solvation = -13545.802253 eV Core-core repulsion = 11025.700263 eV Total energy + Delta-G solvation = -2520.101989 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.81449 -40.00679 -36.25691 -32.74525 -30.92651 -30.77393 -28.90696 -24.59978 -23.78869 -22.70174 -20.36117 -18.35244 -17.34725 -16.85414 -16.11782 -15.66413 -14.63376 -14.35059 -13.93037 -13.70457 -13.45648 -13.13889 -12.72200 -12.44086 -11.99560 -11.89049 -11.02640 -10.96551 -10.82945 -10.22981 -9.73277 -9.52926 -9.46058 -9.05799 -8.84575 -7.43827 -5.86614 -3.24584 1.00820 1.20345 3.27164 3.30050 3.37655 3.71458 4.13723 4.46340 4.49160 4.71198 4.82316 4.97695 5.23940 5.42655 5.52951 5.73718 5.89146 5.96041 6.03061 6.12768 6.31952 6.59901 6.68720 6.82053 7.84218 7.87025 8.30918 9.06610 9.78715 9.96652 11.31200 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.038205 B = 0.010153 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.716987 B = 2757.053862 C = 3238.339166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.211 3.789 3 H 0.075 0.925 4 N -0.745 5.745 5 C -0.249 4.249 6 H 0.093 0.907 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.277 1.277 12 H -0.288 1.288 13 C -0.060 4.060 14 C -0.138 4.138 15 C 0.086 3.914 16 N -0.469 5.469 17 C 0.070 3.930 18 C 0.048 3.952 19 F -0.128 7.128 20 H 0.069 0.931 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.362 0.638 24 H 0.261 0.739 25 H 0.143 0.857 26 H 0.161 0.839 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -3.544 -13.966 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.102 3.898 3 H 0.093 0.907 4 N -0.389 5.389 5 C -0.379 4.379 6 H 0.111 0.889 7 C -0.187 4.187 8 N -0.576 5.576 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.204 1.204 12 H -0.214 1.214 13 C -0.069 4.069 14 C -0.158 4.158 15 C -0.070 4.070 16 N -0.178 5.178 17 C -0.089 4.089 18 C 0.026 3.974 19 F -0.107 7.107 20 H 0.088 0.912 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.197 0.803 24 H 0.071 0.929 25 H 0.160 0.840 26 H 0.178 0.822 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.488 -3.749 -14.494 15.044 hybrid contribution 0.022 -0.643 0.904 1.110 sum -1.467 -4.392 -13.590 14.357 Atomic orbital electron populations 1.22352 0.96741 1.01448 1.01311 1.19129 0.92855 0.95478 0.82353 0.90739 1.42853 1.79885 1.09470 1.06736 1.19047 1.37788 0.95826 0.85212 0.88893 1.24659 1.01011 0.97554 0.95494 1.69693 1.51904 1.35584 1.00424 0.86620 0.78360 0.86790 0.77144 1.20801 1.20378 1.21431 1.21109 0.95637 0.94771 0.95396 1.21992 0.99136 0.94320 1.00349 1.22770 0.96099 1.00366 0.87801 1.67678 1.14901 1.07351 1.27872 1.22793 0.97516 0.90978 0.97605 1.18639 1.03609 0.79586 0.95611 1.91499 1.90529 1.31986 1.96693 0.91205 0.93763 0.93188 0.80334 0.92864 0.83977 0.82185 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.47 37.16 0.35 -2.40 15 2 C 0.21 4.09 2.93 -69.08 -0.20 3.88 15 3 H 0.07 1.52 7.81 -51.93 -0.41 1.12 15 4 N -0.74 -17.12 4.85 -54.55 -0.26 -17.39 15 5 C -0.25 -6.85 10.41 -15.06 -0.16 -7.01 15 6 H 0.09 2.74 8.06 -52.49 -0.42 2.31 15 7 C 0.01 0.26 5.50 -17.43 -0.10 0.17 15 8 N -0.93 -28.61 13.97 55.49 0.78 -27.84 15 9 Si 0.88 21.32 27.74 -169.99 -4.72 16.60 15 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 11 H -0.28 -6.20 6.51 56.52 0.37 -5.83 15 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 13 C -0.06 -1.00 5.09 -104.26 -0.53 -1.54 15 14 C -0.14 -2.14 9.31 -39.45 -0.37 -2.51 15 15 C 0.09 1.17 11.18 -17.55 -0.20 0.97 15 16 N -0.47 -6.69 10.36 -13.19 -0.14 -6.83 15 17 C 0.07 0.94 11.17 -17.46 -0.20 0.75 15 18 C 0.05 0.73 7.29 -39.27 -0.29 0.44 15 19 F -0.13 -1.97 16.70 2.25 0.04 -1.93 15 20 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.36 7.98 3.34 -40.82 -0.14 7.85 15 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 25 H 0.14 2.21 6.18 -52.49 -0.32 1.89 15 26 H 0.16 1.67 8.06 -52.49 -0.42 1.24 15 27 H 0.16 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 240.96 15.07 3.63 3.63 Total: -1.00 -30.40 240.96 -4.92 -35.32 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -2.57 Total: 5.66 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.68 Total: -7.24 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.37 Total: -52.05 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.72 Total: 16.60 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.40 -4.92 -35.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.769 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds