Wall clock time and date at job start Sun Mar 29 2020 21:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 5 5 C 1.36936 * 120.00314 * 274.99849 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.50697 * 109.46954 * 239.99873 * 2 1 3 14 14 C 1.38629 * 120.79940 * 264.71856 * 13 2 1 15 15 C 1.38198 * 119.19110 * 179.80256 * 14 13 2 16 16 N 1.31878 * 120.81773 * 0.48176 * 15 14 13 17 17 C 1.31841 * 121.75386 * 359.74960 * 16 15 14 18 18 C 1.38466 * 120.72527 * 0.02562 * 17 16 15 19 19 F 1.35091 * 120.44409 * 180.02562 * 18 17 16 20 20 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 21 21 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 22 22 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 23 23 H 0.97000 * 120.00040 * 94.99981 * 4 2 1 24 24 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 25 25 H 1.07998 * 120.40666 * 0.02562 * 14 13 2 26 26 H 1.08001 * 119.59026 * 180.21075 * 15 14 13 27 27 H 1.07993 * 119.63850 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.7431 -0.0037 4.6414 9 14 3.0578 -2.4738 3.4249 10 1 1.8628 -3.2929 3.7507 11 1 3.5267 -2.8052 2.0554 12 1 4.1381 -2.7639 4.4016 13 6 2.0323 -0.7104 -1.2304 14 6 2.3723 -2.0536 -1.1855 15 6 2.8254 -2.6731 -2.3348 16 7 2.9453 -2.0001 -3.4626 17 6 2.6365 -0.7210 -3.5435 18 6 2.1715 -0.0339 -2.4349 19 9 1.8563 1.2766 -2.5243 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 2.2490 -1.6317 1.1527 24 1 3.0706 -0.4598 5.4323 25 1 2.2806 -2.6102 -0.2645 26 1 3.0888 -3.7201 -2.3079 27 1 2.7482 -0.2031 -4.4846 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:35 Heat of formation + Delta-G solvation = -15.715089 kcal Electronic energy + Delta-G solvation = -13546.676567 eV Core-core repulsion = 11025.700263 eV Total energy + Delta-G solvation = -2520.976304 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.99382 -41.16421 -37.85774 -34.60370 -32.55179 -31.95788 -30.50476 -26.20632 -25.18120 -24.09979 -21.89407 -20.19471 -18.57203 -18.14842 -17.43463 -16.84622 -16.51884 -15.86436 -15.26621 -15.06760 -14.69967 -14.62941 -14.30496 -14.00470 -13.69640 -13.10382 -12.89803 -12.65891 -12.40526 -11.96323 -11.84244 -11.18412 -10.66653 -10.61372 -9.98603 -9.44642 -8.05805 -5.42674 -0.09522 0.01300 1.34362 1.40311 1.46953 2.45613 2.60431 2.99632 3.23750 3.30534 3.50399 3.53386 3.77465 3.90016 4.29353 4.45977 4.51459 4.67923 4.79358 4.86464 4.92032 5.15874 5.32547 5.59839 5.71408 6.16221 6.76501 7.00629 7.71834 7.93429 9.15214 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.038205 B = 0.010153 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.716987 B = 2757.053862 C = 3238.339166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.207 3.793 3 H 0.054 0.946 4 N -0.746 5.746 5 C -0.238 4.238 6 H 0.057 0.943 7 C -0.060 4.060 8 N -0.981 5.981 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.245 1.245 12 H -0.295 1.295 13 C -0.077 4.077 14 C -0.148 4.148 15 C 0.098 3.902 16 N -0.476 5.476 17 C 0.082 3.918 18 C 0.038 3.962 19 F -0.133 7.133 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.369 0.631 24 H 0.259 0.741 25 H 0.142 0.858 26 H 0.196 0.804 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -5.653 -16.314 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.099 3.901 3 H 0.072 0.928 4 N -0.392 5.392 5 C -0.369 4.369 6 H 0.075 0.925 7 C -0.252 4.252 8 N -0.631 5.631 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.170 1.170 12 H -0.222 1.222 13 C -0.086 4.086 14 C -0.168 4.168 15 C -0.058 4.058 16 N -0.184 5.184 17 C -0.076 4.076 18 C 0.016 3.984 19 F -0.112 7.112 20 H 0.067 0.933 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.205 0.795 24 H 0.068 0.932 25 H 0.160 0.840 26 H 0.213 0.787 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.239 -5.859 -16.910 17.939 hybrid contribution -0.091 0.108 1.544 1.550 sum -1.330 -5.750 -15.366 16.461 Atomic orbital electron populations 1.22207 0.95194 1.02086 1.01411 1.19166 0.93899 0.94576 0.82455 0.92775 1.42765 1.80179 1.09768 1.06441 1.18968 1.36234 0.94596 0.87054 0.92535 1.25517 1.01751 1.02922 0.94964 1.69885 1.53932 1.37914 1.01386 0.85497 0.78008 0.80336 0.78531 1.19867 1.16961 1.22188 1.20886 0.97337 0.95667 0.94725 1.22064 0.99853 0.93700 1.01229 1.23272 0.94141 1.01703 0.86656 1.67817 1.14995 1.07555 1.28040 1.23266 0.95536 0.90765 0.98057 1.18749 1.04395 0.79518 0.95755 1.91489 1.90669 1.32308 1.96703 0.93262 0.91481 0.92217 0.79482 0.93179 0.84039 0.78739 0.78783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.47 71.98 0.68 -4.42 15 2 C 0.21 7.96 2.93 44.25 0.13 8.09 15 3 H 0.05 2.27 7.81 -2.39 -0.02 2.26 15 4 N -0.75 -33.97 4.85 -326.51 -1.58 -35.55 15 5 C -0.24 -13.39 10.41 84.03 0.87 -12.51 15 6 H 0.06 3.51 8.06 -2.91 -0.02 3.49 15 7 C -0.06 -3.46 5.50 84.86 0.47 -3.00 15 8 N -0.98 -62.29 13.97 21.65 0.30 -61.98 15 9 Si 0.95 43.59 27.74 68.60 1.90 45.50 15 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 11 H -0.25 -9.82 6.51 99.48 0.65 -9.18 15 12 H -0.30 -13.84 7.11 99.48 0.71 -13.13 15 13 C -0.08 -2.45 5.09 -19.63 -0.10 -2.55 15 14 C -0.15 -4.17 9.31 22.35 0.21 -3.96 15 15 C 0.10 2.28 11.18 84.68 0.95 3.23 15 16 N -0.48 -11.68 10.36 -195.66 -2.03 -13.70 15 17 C 0.08 1.94 11.17 84.75 0.95 2.88 15 18 C 0.04 1.07 7.29 22.47 0.16 1.24 15 19 F -0.13 -3.90 16.70 44.97 0.75 -3.15 15 20 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.37 15.60 3.34 -92.71 -0.31 15.29 15 24 H 0.26 15.64 8.31 -92.71 -0.77 14.87 15 25 H 0.14 3.96 6.18 -2.91 -0.02 3.94 15 26 H 0.20 3.06 8.06 -2.91 -0.02 3.04 15 27 H 0.20 3.25 8.06 -2.91 -0.02 3.23 15 Total: -1.00 -66.30 240.96 4.48 -61.82 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.82 Total: 18.08 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.32 Total: -11.01 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.31 Total: -111.24 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.75 Total: -3.15 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.50 kcal Total: -66.30 4.48 -61.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.105 kcal (2) G-P(sol) polarization free energy of solvation -66.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds