Wall clock time and date at job start Sun Mar 29 2020 21:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46993 * 2 1 4 4 N 1.46496 * 109.47143 * 239.99527 * 2 1 3 5 5 C 1.36943 * 119.99962 * 107.47078 * 4 2 1 6 6 H 1.08001 * 119.99943 * 0.27228 * 5 4 2 7 7 C 1.38807 * 120.00111 * 180.27780 * 5 4 2 8 8 N 1.31617 * 119.99922 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99939 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47045 * 90.00409 * 9 7 5 11 11 H 1.48507 * 109.46809 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47091 * 330.00056 * 9 7 5 13 13 C 1.50699 * 109.47063 * 119.99655 * 2 1 3 14 14 C 1.38636 * 120.80209 * 94.52172 * 13 2 1 15 15 C 1.38189 * 119.19489 * 179.97438 * 14 13 2 16 16 N 1.31871 * 120.81953 * 0.02587 * 15 14 13 17 17 C 1.31840 * 121.75254 * 359.97438 * 16 15 14 18 18 C 1.38464 * 120.72584 * 359.74043 * 17 16 15 19 19 F 1.35107 * 120.44937 * 180.26528 * 18 17 16 20 20 H 1.08999 * 109.47070 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47045 * 300.00323 * 1 2 3 22 22 H 1.09001 * 109.47040 * 60.00492 * 1 2 3 23 23 H 0.97000 * 120.00425 * 287.74919 * 4 2 1 24 24 H 0.97007 * 120.00245 * 179.97438 * 8 7 5 25 25 H 1.08002 * 120.40023 * 0.02562 * 14 13 2 26 26 H 1.07996 * 119.58980 * 180.02562 * 15 14 13 27 27 H 1.08005 * 119.63771 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.5823 0.0255 -2.2180 6 1 2.6710 1.0990 -2.1403 7 6 3.0397 -0.6283 -3.3538 8 7 3.5813 0.0601 -4.3362 9 14 2.8868 -2.4852 -3.4880 10 1 1.5860 -2.8307 -4.1156 11 1 3.9952 -3.0141 -4.3229 12 1 2.9576 -3.0870 -2.1322 13 6 2.0323 -0.7103 1.2305 14 6 2.3575 -2.0574 1.1896 15 6 2.8155 -2.6754 2.3376 16 7 2.9445 -2.0002 3.4629 17 6 2.6455 -0.7185 3.5412 18 6 2.1862 -0.0302 2.4310 19 9 1.8866 1.2845 2.5162 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.9386 -1.6549 -1.2660 24 1 3.9013 -0.3968 -5.1299 25 1 2.2548 -2.6168 0.2714 26 1 3.0711 -3.7244 2.3128 27 1 2.7637 -0.1989 4.4806 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307027351.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:37 Heat of formation + Delta-G solvation = 2.578150 kcal Electronic energy + Delta-G solvation = -13554.243971 eV Core-core repulsion = 11034.060922 eV Total energy + Delta-G solvation = -2520.183050 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.75262 -39.91779 -36.22493 -32.73735 -30.89605 -30.71126 -28.96055 -24.48021 -23.73499 -22.68713 -20.45190 -18.26326 -17.29295 -16.80688 -16.12966 -15.60070 -14.65721 -14.26878 -13.90144 -13.61038 -13.37940 -13.13460 -12.76329 -12.52847 -11.93280 -11.89678 -11.01450 -10.99074 -10.79972 -10.25526 -9.75713 -9.49216 -9.32196 -9.10399 -8.78861 -7.48715 -5.87888 -3.26110 1.08541 1.29368 3.25823 3.30182 3.37187 3.79037 4.21320 4.47482 4.53800 4.77653 4.89755 5.06747 5.25909 5.43252 5.58451 5.76074 5.92919 5.94089 6.00812 6.17410 6.29496 6.58728 6.67095 6.81353 7.84515 7.92239 8.29377 9.04787 9.76887 9.94717 11.29800 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.037053 B = 0.010171 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.490690 B = 2752.176887 C = 3142.631933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.209 3.791 3 H 0.086 0.914 4 N -0.740 5.740 5 C -0.252 4.252 6 H 0.093 0.907 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.278 1.278 13 C -0.065 4.065 14 C -0.133 4.133 15 C 0.083 3.917 16 N -0.471 5.471 17 C 0.067 3.933 18 C 0.045 3.955 19 F -0.130 7.130 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.362 0.638 24 H 0.261 0.739 25 H 0.141 0.859 26 H 0.159 0.841 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 -3.630 12.870 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 H 0.104 0.896 4 N -0.382 5.382 5 C -0.382 4.382 6 H 0.111 0.889 7 C -0.187 4.187 8 N -0.575 5.575 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.075 4.075 14 C -0.153 4.153 15 C -0.073 4.073 16 N -0.180 5.180 17 C -0.091 4.091 18 C 0.023 3.977 19 F -0.109 7.109 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.196 0.804 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.176 0.824 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.827 -3.827 13.412 14.463 hybrid contribution -0.321 -0.691 -1.016 1.270 sum -4.148 -4.518 12.396 13.830 Atomic orbital electron populations 1.22341 0.96659 1.01385 1.01494 1.19163 0.92582 0.95880 0.82507 0.89562 1.42791 1.73212 1.05456 1.16720 1.19116 1.32145 0.93120 0.93808 0.88909 1.24669 1.00257 0.97370 0.96386 1.69693 1.45455 1.34554 1.07812 0.86594 0.77745 0.86979 0.77354 1.20825 1.21475 1.20412 1.21506 0.95590 0.94845 0.95582 1.21974 0.98872 0.94326 1.00110 1.22748 0.96282 1.00326 0.87953 1.67661 1.14983 1.07339 1.27981 1.22769 0.97782 0.90987 0.97573 1.18673 1.03913 0.79388 0.95732 1.91493 1.90939 1.31723 1.96737 0.93273 0.93411 0.91325 0.80374 0.92840 0.84107 0.82361 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.50 37.16 0.35 -2.28 15 2 C 0.21 4.00 3.05 -69.08 -0.21 3.79 15 3 H 0.09 1.75 7.54 -51.93 -0.39 1.36 15 4 N -0.74 -16.81 4.51 -54.55 -0.25 -17.05 15 5 C -0.25 -6.91 10.40 -15.06 -0.16 -7.07 15 6 H 0.09 2.73 7.92 -52.49 -0.42 2.31 15 7 C 0.01 0.28 5.50 -17.43 -0.10 0.18 15 8 N -0.93 -28.53 13.97 55.49 0.78 -27.75 15 9 Si 0.88 21.24 27.73 -169.99 -4.71 16.53 15 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 12 H -0.28 -6.12 6.52 56.52 0.37 -5.75 15 13 C -0.06 -1.11 5.09 -104.25 -0.53 -1.64 15 14 C -0.13 -2.11 9.39 -39.45 -0.37 -2.48 15 15 C 0.08 1.18 11.18 -17.55 -0.20 0.98 15 16 N -0.47 -6.97 10.36 -13.20 -0.14 -7.10 15 17 C 0.07 0.95 11.17 -17.46 -0.20 0.75 15 18 C 0.05 0.71 7.29 -39.28 -0.29 0.42 15 19 F -0.13 -2.04 16.69 2.25 0.04 -2.00 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 23 H 0.36 7.92 4.03 -40.82 -0.16 7.75 15 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 25 H 0.14 2.25 6.37 -52.49 -0.33 1.92 15 26 H 0.16 1.74 8.06 -52.49 -0.42 1.32 15 27 H 0.16 1.77 8.06 -52.48 -0.42 1.35 15 LS Contribution 241.27 15.07 3.64 3.64 Total: -1.00 -30.23 241.27 -4.93 -35.15 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.59 Total: 5.94 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.69 Total: -7.35 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.39 Total: -51.91 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.23 -4.93 -35.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027351.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.730 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds