Wall clock time and date at job start Sun Mar 29 2020 21:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46993 * 2 1 4 4 N 1.46496 * 109.47143 * 239.99527 * 2 1 3 5 5 C 1.36943 * 119.99962 * 107.47078 * 4 2 1 6 6 H 1.08001 * 119.99943 * 0.27228 * 5 4 2 7 7 C 1.38807 * 120.00111 * 180.27780 * 5 4 2 8 8 N 1.31617 * 119.99922 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99939 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47045 * 90.00409 * 9 7 5 11 11 H 1.48507 * 109.46809 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47091 * 330.00056 * 9 7 5 13 13 C 1.50699 * 109.47063 * 119.99655 * 2 1 3 14 14 C 1.38636 * 120.80209 * 94.52172 * 13 2 1 15 15 C 1.38189 * 119.19489 * 179.97438 * 14 13 2 16 16 N 1.31871 * 120.81953 * 0.02587 * 15 14 13 17 17 C 1.31840 * 121.75254 * 359.97438 * 16 15 14 18 18 C 1.38464 * 120.72584 * 359.74043 * 17 16 15 19 19 F 1.35107 * 120.44937 * 180.26528 * 18 17 16 20 20 H 1.08999 * 109.47070 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47045 * 300.00323 * 1 2 3 22 22 H 1.09001 * 109.47040 * 60.00492 * 1 2 3 23 23 H 0.97000 * 120.00425 * 287.74919 * 4 2 1 24 24 H 0.97007 * 120.00245 * 179.97438 * 8 7 5 25 25 H 1.08002 * 120.40023 * 0.02562 * 14 13 2 26 26 H 1.07996 * 119.58980 * 180.02562 * 15 14 13 27 27 H 1.08005 * 119.63771 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.5823 0.0255 -2.2180 6 1 2.6710 1.0990 -2.1403 7 6 3.0397 -0.6283 -3.3538 8 7 3.5813 0.0601 -4.3362 9 14 2.8868 -2.4852 -3.4880 10 1 1.5860 -2.8307 -4.1156 11 1 3.9952 -3.0141 -4.3229 12 1 2.9576 -3.0870 -2.1322 13 6 2.0323 -0.7103 1.2305 14 6 2.3575 -2.0574 1.1896 15 6 2.8155 -2.6754 2.3376 16 7 2.9445 -2.0002 3.4629 17 6 2.6455 -0.7185 3.5412 18 6 2.1862 -0.0302 2.4310 19 9 1.8866 1.2845 2.5162 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.9386 -1.6549 -1.2660 24 1 3.9013 -0.3968 -5.1299 25 1 2.2548 -2.6168 0.2714 26 1 3.0711 -3.7244 2.3128 27 1 2.7637 -0.1989 4.4806 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027351.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:36 Heat of formation + Delta-G solvation = -17.368659 kcal Electronic energy + Delta-G solvation = -13555.108930 eV Core-core repulsion = 11034.060922 eV Total energy + Delta-G solvation = -2521.048008 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.96732 -41.11010 -37.82098 -34.60008 -32.54031 -31.90998 -30.52815 -26.04237 -25.20401 -24.09274 -21.97328 -20.12032 -18.54935 -18.12236 -17.45377 -16.81636 -16.53452 -15.79785 -15.22520 -14.98202 -14.74018 -14.53925 -14.25875 -14.21738 -13.57126 -13.07905 -12.89155 -12.66015 -12.31666 -12.00012 -11.83148 -11.19904 -10.63439 -10.55576 -9.95478 -9.48236 -8.05796 -5.42725 -0.06145 0.06873 1.35091 1.41370 1.47928 2.45916 2.63580 3.03518 3.23121 3.35428 3.52169 3.60000 3.82577 3.94003 4.29728 4.45218 4.53664 4.70071 4.82175 4.89217 4.95321 5.19764 5.30924 5.63670 5.70855 6.15962 6.79305 7.00453 7.71598 7.93527 9.15198 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.037053 B = 0.010171 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.490690 B = 2752.176887 C = 3142.631933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.205 3.795 3 H 0.063 0.937 4 N -0.741 5.741 5 C -0.240 4.240 6 H 0.055 0.945 7 C -0.060 4.060 8 N -0.982 5.982 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.242 1.242 13 C -0.081 4.081 14 C -0.143 4.143 15 C 0.094 3.906 16 N -0.478 5.478 17 C 0.078 3.922 18 C 0.034 3.966 19 F -0.134 7.134 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.370 0.630 24 H 0.259 0.741 25 H 0.141 0.859 26 H 0.193 0.807 27 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.729 -5.782 14.931 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.096 3.904 3 H 0.081 0.919 4 N -0.385 5.385 5 C -0.371 4.371 6 H 0.073 0.927 7 C -0.251 4.251 8 N -0.631 5.631 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.223 1.223 12 H -0.167 1.167 13 C -0.092 4.092 14 C -0.163 4.163 15 C -0.062 4.062 16 N -0.186 5.186 17 C -0.080 4.080 18 C 0.012 3.988 19 F -0.113 7.113 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.205 0.795 24 H 0.068 0.932 25 H 0.159 0.841 26 H 0.210 0.790 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.353 -5.979 15.544 17.214 hybrid contribution -0.177 0.080 -1.553 1.566 sum -4.529 -5.899 13.991 15.845 Atomic orbital electron populations 1.22200 0.94456 1.02376 1.01873 1.19229 0.94075 0.94733 0.82332 0.91873 1.42665 1.73275 1.05645 1.16871 1.19031 1.31106 0.91930 0.95016 0.92672 1.25528 1.00604 1.02995 0.96005 1.69887 1.47635 1.36904 1.08720 0.85465 0.77418 0.80323 0.78902 1.20154 1.22288 1.16660 1.21279 0.97067 0.95707 0.95098 1.22051 0.99585 0.93774 1.00940 1.23245 0.94413 1.01669 0.86884 1.67794 1.15109 1.07559 1.28179 1.23234 0.95905 0.90799 0.98062 1.18786 1.04699 0.79336 0.95946 1.91484 1.91064 1.31998 1.96750 0.91918 0.91338 0.92642 0.79509 0.93189 0.84117 0.79005 0.79016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.50 71.98 0.68 -4.09 15 2 C 0.21 7.76 3.05 44.25 0.13 7.89 15 3 H 0.06 2.64 7.54 -2.39 -0.02 2.62 15 4 N -0.74 -33.25 4.51 -326.51 -1.47 -34.72 15 5 C -0.24 -13.45 10.40 84.03 0.87 -12.57 15 6 H 0.06 3.42 7.92 -2.91 -0.02 3.40 15 7 C -0.06 -3.43 5.50 84.86 0.47 -2.97 15 8 N -0.98 -62.21 13.97 21.65 0.30 -61.91 15 9 Si 0.95 43.40 27.73 68.60 1.90 45.30 15 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 11 H -0.30 -13.81 7.11 99.48 0.71 -13.11 15 12 H -0.24 -9.50 6.52 99.48 0.65 -8.86 15 13 C -0.08 -2.64 5.09 -19.63 -0.10 -2.74 15 14 C -0.14 -4.17 9.39 22.35 0.21 -3.96 15 15 C 0.09 2.30 11.18 84.68 0.95 3.25 15 16 N -0.48 -12.38 10.36 -195.67 -2.03 -14.41 15 17 C 0.08 1.95 11.17 84.75 0.95 2.90 15 18 C 0.03 1.01 7.29 22.47 0.16 1.17 15 19 F -0.13 -4.04 16.69 44.97 0.75 -3.29 15 20 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.37 15.40 4.03 -92.71 -0.37 15.03 15 24 H 0.26 15.62 8.31 -92.70 -0.77 14.85 15 25 H 0.14 4.05 6.37 -2.91 -0.02 4.03 15 26 H 0.19 3.30 8.06 -2.91 -0.02 3.28 15 27 H 0.19 3.48 8.06 -2.91 -0.02 3.45 15 Total: -1.00 -65.96 241.27 4.54 -61.42 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.75 Total: 18.72 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 4.33 Total: -11.12 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -3.20 Total: -111.04 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.75 Total: -3.29 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.90 Total: 45.30 kcal Total: -65.96 4.54 -61.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027351.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.049 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds