Wall clock time and date at job start Sun Mar 29 2020 21:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86795 * 120.00368 * 2 1 4 4 H 1.48498 * 109.47137 * 240.00144 * 3 2 1 5 5 H 1.48497 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46825 * 119.99972 * 3 2 1 7 7 C 1.38813 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99724 * 180.02562 * 7 2 1 9 9 O 1.34854 * 119.99693 * 359.97438 * 7 2 1 10 10 C 1.34753 * 116.99900 * 179.97438 * 9 7 2 11 11 O 1.21532 * 119.99950 * 0.02562 * 10 9 7 12 12 C 1.47498 * 120.00504 * 180.02562 * 10 9 7 13 13 C 1.40098 * 120.58049 * 0.28091 * 12 10 9 14 14 C 1.38319 * 118.30770 * 180.28687 * 13 12 10 15 15 C 1.38362 * 119.38600 * 359.43624 * 14 13 12 16 16 N 1.31922 * 121.15298 * 0.30116 * 15 14 13 17 17 C 1.31926 * 121.85221 * 359.97438 * 16 15 14 18 18 F 1.35097 * 119.77091 * 179.97438 * 17 16 15 19 19 H 0.96999 * 119.99202 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.84751 * 359.97438 * 13 12 10 21 21 H 1.08002 * 120.30966 * 179.71924 * 14 13 12 22 22 H 1.08006 * 119.42794 * 180.28239 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2834 2.7464 0.0006 6 1 3.1021 1.6962 1.2126 7 6 2.0082 -1.2022 -0.0005 8 1 3.0882 -1.2022 -0.0001 9 8 1.3338 -2.3700 -0.0005 10 6 2.0677 -3.5002 -0.0016 11 8 3.2813 -3.4367 -0.0021 12 6 1.3980 -4.8144 -0.0023 13 6 -0.0002 -4.9019 -0.0077 14 6 -0.5788 -6.1582 -0.0019 15 6 0.2322 -7.2793 -0.0030 16 7 1.5469 -7.1704 -0.0035 17 6 2.1483 -5.9962 -0.0034 18 9 3.4978 -5.9337 -0.0034 19 1 -0.4849 0.8401 0.0004 20 1 -0.6108 -4.0111 -0.0110 21 1 -1.6537 -6.2633 -0.0013 22 1 -0.2189 -8.2606 -0.0032 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307048148.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:20 Heat of formation + Delta-G solvation = -105.571788 kcal Electronic energy + Delta-G solvation = -13229.174244 eV Core-core repulsion = 10470.749705 eV Total energy + Delta-G solvation = -2758.424540 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 211.043 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -50.14648 -41.49887 -40.48051 -37.35133 -34.49601 -33.88967 -32.14334 -27.89804 -25.82564 -24.58109 -22.52771 -19.98887 -19.27466 -18.84858 -18.17582 -17.41533 -17.07123 -16.45320 -16.22923 -15.99685 -15.03318 -14.72817 -14.25340 -14.17409 -13.70642 -13.52686 -13.27945 -12.47888 -12.19543 -12.12631 -11.41922 -11.19117 -10.84157 -10.76111 -10.15335 -8.63194 -6.39759 -0.63744 -0.05317 1.32798 1.34527 1.48325 1.67601 1.98356 2.32749 2.54450 2.58606 2.94054 3.36700 3.76894 3.86863 4.15685 4.60352 4.65619 4.92928 4.99506 5.09234 5.48266 5.72800 6.43861 6.48451 6.80813 7.58405 8.56396 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.054466 B = 0.008632 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.961738 B = 3242.876173 C = 3746.994592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.003 3.997 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.254 1.254 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.082 0.918 9 O -0.221 6.221 10 C 0.430 3.570 11 O -0.574 6.574 12 C -0.198 4.198 13 C -0.007 4.007 14 C -0.163 4.163 15 C 0.163 3.837 16 N -0.531 5.531 17 C 0.332 3.668 18 F -0.113 7.113 19 H 0.284 0.716 20 H 0.155 0.845 21 H 0.203 0.797 22 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -9.662 -0.013 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.199 4.199 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.178 1.178 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.100 0.900 9 O -0.129 6.129 10 C 0.279 3.721 11 O -0.473 6.473 12 C -0.203 4.203 13 C -0.033 4.033 14 C -0.182 4.182 15 C 0.007 3.993 16 N -0.246 5.246 17 C 0.180 3.820 18 F -0.092 7.092 19 H 0.093 0.907 20 H 0.173 0.827 21 H 0.220 0.780 22 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.182 -10.208 -0.013 11.448 hybrid contribution 0.606 1.586 0.001 1.697 sum -4.576 -8.623 -0.012 9.762 Atomic orbital electron populations 1.70015 1.07477 1.29929 1.45125 1.26548 0.96997 1.02068 0.94249 0.84669 0.77709 0.74106 0.79789 1.18697 1.17788 1.18709 1.21497 0.92445 0.80855 1.55071 0.90045 1.83874 1.39486 1.13619 1.75893 1.21240 0.85874 0.86240 0.78790 1.90656 1.16267 1.88318 1.52063 1.20083 0.96695 0.89751 1.13758 1.22159 0.90812 1.01521 0.88803 1.22704 1.04702 0.90209 1.00588 1.23789 0.85156 1.02204 0.88172 1.67267 1.15759 1.23857 1.17749 1.18256 0.78412 0.89245 0.96136 1.91628 1.28270 1.96638 1.92615 0.90692 0.82718 0.78015 0.75530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.49 13.67 21.64 0.30 -50.20 14 2 C 0.00 0.19 5.50 84.89 0.47 0.65 14 3 Si 1.02 42.66 29.55 68.60 2.03 44.69 14 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 14 5 H -0.25 -9.62 7.11 99.48 0.71 -8.91 14 6 H -0.26 -10.69 7.11 99.48 0.71 -9.99 14 7 C -0.42 -25.84 9.65 67.96 0.66 -25.18 14 8 H 0.08 5.10 6.86 -2.91 -0.02 5.08 14 9 O -0.22 -13.11 9.07 11.13 0.10 -13.01 14 10 C 0.43 23.43 7.84 70.26 0.55 23.98 14 11 O -0.57 -34.48 14.62 19.73 0.29 -34.19 14 12 C -0.20 -8.33 5.90 -19.96 -0.12 -8.45 14 13 C -0.01 -0.24 9.74 22.74 0.22 -0.01 14 14 C -0.16 -3.17 10.09 22.32 0.23 -2.95 14 15 C 0.16 3.20 11.17 84.71 0.95 4.14 14 16 N -0.53 -16.44 10.36 -195.64 -2.03 -18.47 14 17 C 0.33 13.19 8.42 85.10 0.72 13.90 14 18 F -0.11 -5.07 15.59 44.97 0.70 -4.37 14 19 H 0.28 14.49 8.31 -92.71 -0.77 13.72 14 20 H 0.16 5.11 7.70 -2.91 -0.02 5.09 14 21 H 0.20 1.83 8.06 -2.91 -0.02 1.81 14 22 H 0.23 1.79 8.06 -2.91 -0.02 1.77 14 Total: -1.00 -77.19 221.45 6.31 -70.88 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: 1.26 Total: -1.41 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 3.66 Total: 6.09 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -1.73 Total: -68.67 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: 0.39 Total: -47.21 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.70 Total: -4.37 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -77.19 6.31 -70.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307048148.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.695 kcal (2) G-P(sol) polarization free energy of solvation -77.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds