Wall clock time and date at job start Sun Mar 29 2020 22:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39886 * 125.73163 * 2 1 4 4 C 1.30263 * 109.26788 * 180.02562 * 3 2 1 5 5 C 1.41541 * 108.19190 * 359.97438 * 4 3 2 6 6 C 1.46572 * 126.53885 * 179.97438 * 5 4 3 7 7 O 1.21637 * 120.00012 * 180.02562 * 6 5 4 8 8 O 1.34880 * 119.99844 * 0.02999 * 6 5 4 9 9 C 1.34896 * 116.99565 * 180.02562 * 8 6 5 10 10 H 1.08003 * 120.00886 * 359.97438 * 9 8 6 11 11 C 1.38745 * 119.99804 * 179.97438 * 9 8 6 12 12 N 1.31462 * 120.00096 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99876 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47075 * 90.00124 * 13 11 9 15 15 H 1.48504 * 109.47182 * 209.99919 * 13 11 9 16 16 H 1.48501 * 109.47171 * 329.99950 * 13 11 9 17 17 C 1.34834 * 125.73771 * 180.02562 * 2 1 3 18 18 N 1.37943 * 126.46001 * 0.22412 * 17 2 1 19 19 H 1.08999 * 109.46953 * 269.95279 * 1 2 3 20 20 H 1.08999 * 109.47300 * 29.95350 * 1 2 3 21 21 H 1.09004 * 109.47045 * 149.95538 * 1 2 3 22 22 H 1.08011 * 125.90201 * 180.02562 * 4 3 2 23 23 H 0.97006 * 120.00232 * 179.97438 * 12 11 9 24 24 H 0.96999 * 120.00069 * 179.68811 * 18 17 2 25 25 H 0.96997 * 119.99877 * 359.68548 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2819 1.1355 0.0000 4 6 3.5312 0.7664 -0.0005 5 6 3.5739 -0.6484 -0.0003 6 6 4.7773 -1.4851 -0.0013 7 8 4.6753 -2.6972 -0.0015 8 8 5.9978 -0.9110 -0.0019 9 6 7.0635 -1.7381 -0.0034 10 1 6.9168 -2.8081 -0.0035 11 6 8.3482 -1.2141 -0.0046 12 7 9.3868 -2.0200 -0.0055 13 14 8.6020 0.6366 -0.0051 14 1 8.6706 1.1271 1.3949 15 1 9.8699 0.9621 -0.7063 16 1 7.4674 1.2917 -0.7041 17 6 2.2526 -1.0944 -0.0005 18 7 1.8308 -2.4078 -0.0054 19 1 -0.3633 -0.0008 1.0277 20 1 -0.3634 0.8904 -0.5131 21 1 -0.3633 -0.8896 -0.5145 22 1 4.3865 1.4259 -0.0003 23 1 10.2850 -1.6537 -0.0068 24 1 2.4824 -3.1264 -0.0099 25 1 0.8828 -2.6128 -0.0044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307233850.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:27 Heat of formation + Delta-G solvation = 0.918913 kcal Electronic energy + Delta-G solvation = -13591.673376 eV Core-core repulsion = 10993.619676 eV Total energy + Delta-G solvation = -2598.053700 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.98028 -38.62092 -35.30519 -34.51388 -32.86820 -32.13278 -28.58667 -27.10354 -25.16456 -22.18439 -20.74755 -19.50813 -17.83597 -17.58121 -16.55861 -15.84060 -15.61860 -14.90423 -14.32433 -14.11852 -13.77231 -13.10617 -12.80164 -12.70920 -12.24070 -11.96300 -11.16288 -11.04625 -10.61580 -10.37388 -10.21947 -9.56423 -9.06105 -8.79894 -8.54898 -7.58258 -6.24139 -3.96879 2.11696 2.39564 2.65465 3.31817 3.34897 3.48181 3.83503 4.21523 4.31927 4.38435 4.72879 5.01506 5.22699 5.27612 5.34326 5.55747 5.81716 6.48847 6.61896 6.97515 7.46569 7.59213 7.90470 8.07753 8.18571 8.79035 9.15752 9.88676 10.84855 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.051747 B = 0.008943 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.960011 B = 3130.196051 C = 3656.010414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.406 5.406 3 N -0.320 5.320 4 C 0.127 3.873 5 C -0.328 4.328 6 C 0.504 3.496 7 O -0.564 6.564 8 O -0.250 6.250 9 C -0.373 4.373 10 H 0.108 0.892 11 C 0.062 3.938 12 N -0.881 5.881 13 Si 0.903 3.097 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.258 1.258 17 C 0.422 3.578 18 N -0.832 5.832 19 H 0.071 0.929 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.193 0.807 23 H 0.277 0.723 24 H 0.432 0.568 25 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.479 4.338 -0.087 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.195 5.195 3 N -0.140 5.140 4 C -0.062 4.062 5 C -0.345 4.345 6 C 0.353 3.647 7 O -0.462 6.462 8 O -0.158 6.158 9 C -0.449 4.449 10 H 0.125 0.875 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.729 3.271 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.182 1.182 17 C 0.189 3.811 18 N -0.383 5.383 19 H 0.089 0.911 20 H 0.110 0.890 21 H 0.096 0.904 22 H 0.210 0.790 23 H 0.087 0.913 24 H 0.269 0.731 25 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -17.153 5.059 -0.091 17.884 hybrid contribution 0.620 -0.401 0.021 0.739 sum -16.533 4.658 -0.070 17.177 Atomic orbital electron populations 1.21710 0.74703 1.04132 1.02999 1.48063 1.06085 1.02499 1.62875 1.77076 1.01912 1.05091 1.29893 1.23934 0.94759 0.93908 0.93557 1.18624 0.89322 0.93387 1.33205 1.19200 0.82926 0.85573 0.76988 1.90567 1.87229 1.15624 1.52740 1.83575 1.13712 1.40519 1.78003 1.20624 0.81549 0.91633 1.51141 0.87456 1.24512 0.93686 0.99884 0.95920 1.69622 0.98414 1.35412 1.48702 0.86235 0.77992 0.84009 0.78855 1.19930 1.21005 1.18190 1.17922 0.89381 0.81864 0.91921 1.41738 1.10862 1.02847 1.82851 0.91082 0.88992 0.90401 0.78995 0.91260 0.73055 0.77669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.91 11.25 59.85 0.67 1.58 15 2 N -0.41 -5.89 3.99 -66.79 -0.27 -6.15 15 3 N -0.32 -5.41 12.46 30.89 0.38 -5.02 15 4 C 0.13 2.33 11.86 -16.96 -0.20 2.13 15 5 C -0.33 -6.69 6.15 -104.83 -0.64 -7.34 15 6 C 0.50 12.66 7.87 34.09 0.27 12.93 15 7 O -0.56 -14.98 14.40 -19.37 -0.28 -15.26 15 8 O -0.25 -6.87 8.42 -22.16 -0.19 -7.06 15 9 C -0.37 -11.39 10.11 30.92 0.31 -11.07 15 10 H 0.11 3.58 7.09 -52.48 -0.37 3.20 15 11 C 0.06 1.83 5.49 -17.52 -0.10 1.74 15 12 N -0.88 -26.69 13.96 55.48 0.77 -25.92 15 13 Si 0.90 21.91 28.62 -169.99 -4.86 17.04 15 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.26 -6.06 7.11 56.52 0.40 -5.66 15 17 C 0.42 6.99 7.98 -153.80 -1.23 5.76 15 18 N -0.83 -11.00 9.02 31.41 0.28 -10.71 15 19 H 0.07 0.51 8.14 -51.93 -0.42 0.08 15 20 H 0.09 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.08 0.46 7.46 -51.93 -0.39 0.07 15 22 H 0.19 3.20 8.06 -52.48 -0.42 2.77 15 23 H 0.28 7.68 8.31 -40.82 -0.34 7.35 15 24 H 0.43 6.55 7.02 -40.82 -0.29 6.27 15 25 H 0.40 3.44 8.04 -40.82 -0.33 3.11 15 LS Contribution 235.16 15.07 3.54 3.54 Total: -1.00 -35.38 235.16 -3.30 -38.68 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -1.78 Total: 5.14 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.92 Total: 5.72 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 1.18 Total: -47.81 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.47 Total: -22.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -35.38 -3.30 -38.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307233850.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.599 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds