Wall clock time and date at job start Sun Mar 29 2020 22:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39886 * 125.73163 * 2 1 4 4 C 1.30263 * 109.26788 * 180.02562 * 3 2 1 5 5 C 1.41541 * 108.19190 * 359.97438 * 4 3 2 6 6 C 1.46572 * 126.53885 * 179.97438 * 5 4 3 7 7 O 1.21637 * 120.00012 * 180.02562 * 6 5 4 8 8 O 1.34880 * 119.99844 * 0.02999 * 6 5 4 9 9 C 1.34896 * 116.99565 * 180.02562 * 8 6 5 10 10 H 1.08003 * 120.00886 * 359.97438 * 9 8 6 11 11 C 1.38745 * 119.99804 * 179.97438 * 9 8 6 12 12 N 1.31462 * 120.00096 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99876 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47075 * 90.00124 * 13 11 9 15 15 H 1.48504 * 109.47182 * 209.99919 * 13 11 9 16 16 H 1.48501 * 109.47171 * 329.99950 * 13 11 9 17 17 C 1.34834 * 125.73771 * 180.02562 * 2 1 3 18 18 N 1.37943 * 126.46001 * 0.22412 * 17 2 1 19 19 H 1.08999 * 109.46953 * 269.95279 * 1 2 3 20 20 H 1.08999 * 109.47300 * 29.95350 * 1 2 3 21 21 H 1.09004 * 109.47045 * 149.95538 * 1 2 3 22 22 H 1.08011 * 125.90201 * 180.02562 * 4 3 2 23 23 H 0.97006 * 120.00232 * 179.97438 * 12 11 9 24 24 H 0.96999 * 120.00069 * 179.68811 * 18 17 2 25 25 H 0.96997 * 119.99877 * 359.68548 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2819 1.1355 0.0000 4 6 3.5312 0.7664 -0.0005 5 6 3.5739 -0.6484 -0.0003 6 6 4.7773 -1.4851 -0.0013 7 8 4.6753 -2.6972 -0.0015 8 8 5.9978 -0.9110 -0.0019 9 6 7.0635 -1.7381 -0.0034 10 1 6.9168 -2.8081 -0.0035 11 6 8.3482 -1.2141 -0.0046 12 7 9.3868 -2.0200 -0.0055 13 14 8.6020 0.6366 -0.0051 14 1 8.6706 1.1271 1.3949 15 1 9.8699 0.9621 -0.7063 16 1 7.4674 1.2917 -0.7041 17 6 2.2526 -1.0944 -0.0005 18 7 1.8308 -2.4078 -0.0054 19 1 -0.3633 -0.0008 1.0277 20 1 -0.3634 0.8904 -0.5131 21 1 -0.3633 -0.8896 -0.5145 22 1 4.3865 1.4259 -0.0003 23 1 10.2850 -1.6537 -0.0068 24 1 2.4824 -3.1264 -0.0099 25 1 0.8828 -2.6128 -0.0044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307233850.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:27 Heat of formation + Delta-G solvation = -25.930122 kcal Electronic energy + Delta-G solvation = -13592.837638 eV Core-core repulsion = 10993.619676 eV Total energy + Delta-G solvation = -2599.217962 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.31949 -40.60922 -37.25172 -35.85580 -34.40218 -33.97537 -30.06005 -28.28927 -27.09291 -23.81175 -22.10637 -21.07790 -20.00371 -19.01495 -18.18145 -17.20823 -16.93241 -16.69175 -16.11840 -15.77983 -15.36336 -14.52748 -14.21738 -14.02856 -13.73236 -13.45091 -13.13424 -12.36138 -12.28112 -12.25849 -11.87590 -11.77622 -11.00547 -10.75337 -10.01072 -8.96228 -8.46673 -6.30073 0.71232 1.15569 1.25130 1.39989 1.46084 1.61791 2.34981 2.39013 2.65466 2.76430 3.05085 3.67520 4.01618 4.30975 4.42544 4.51642 4.68533 4.85420 5.32638 5.56951 5.61445 5.98841 6.18073 6.48512 6.65791 6.85371 6.92968 7.75330 8.66514 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.051747 B = 0.008943 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.960011 B = 3130.196051 C = 3656.010414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.395 5.395 3 N -0.319 5.319 4 C 0.125 3.875 5 C -0.375 4.375 6 C 0.502 3.498 7 O -0.591 6.591 8 O -0.257 6.257 9 C -0.400 4.400 10 H 0.058 0.942 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.980 3.020 14 H -0.260 1.260 15 H -0.268 1.268 16 H -0.246 1.246 17 C 0.438 3.562 18 N -0.813 5.813 19 H 0.092 0.908 20 H 0.106 0.894 21 H 0.109 0.891 22 H 0.202 0.798 23 H 0.287 0.713 24 H 0.426 0.574 25 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 6.323 -0.101 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.184 5.184 3 N -0.138 5.138 4 C -0.064 4.064 5 C -0.392 4.392 6 C 0.353 3.647 7 O -0.489 6.489 8 O -0.166 6.166 9 C -0.476 4.476 10 H 0.075 0.925 11 C -0.186 4.186 12 N -0.564 5.564 13 Si 0.800 3.200 14 H -0.185 1.185 15 H -0.193 1.193 16 H -0.170 1.170 17 C 0.200 3.800 18 N -0.364 5.364 19 H 0.110 0.890 20 H 0.124 0.876 21 H 0.127 0.873 22 H 0.219 0.781 23 H 0.097 0.903 24 H 0.261 0.739 25 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -19.462 7.022 -0.104 20.690 hybrid contribution 1.055 -1.153 0.030 1.563 sum -18.407 5.869 -0.074 19.320 Atomic orbital electron populations 1.22292 0.70892 1.06498 1.05154 1.48444 1.07822 1.00929 1.61183 1.77018 1.01450 1.06195 1.29094 1.24049 0.95718 0.93042 0.93619 1.18503 0.88851 0.94198 1.37685 1.20123 0.83408 0.86048 0.75109 1.90536 1.87573 1.17011 1.53762 1.83573 1.13898 1.39740 1.79435 1.20317 0.83500 0.90050 1.53775 0.92453 1.25524 0.92614 1.05973 0.94504 1.69720 0.99284 1.38181 1.49213 0.85114 0.78758 0.76353 0.79793 1.18487 1.19262 1.16952 1.17858 0.88650 0.83325 0.90135 1.41717 1.12289 1.01399 1.81001 0.88988 0.87580 0.87262 0.78138 0.90324 0.73886 0.74769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 11.25 127.77 1.44 2.57 15 2 N -0.39 -10.13 3.99 -365.23 -1.46 -11.59 15 3 N -0.32 -9.94 12.46 -56.19 -0.70 -10.64 15 4 C 0.13 4.42 11.86 85.74 1.02 5.43 15 5 C -0.38 -15.11 6.15 -20.00 -0.12 -15.23 15 6 C 0.50 25.89 7.87 70.00 0.55 26.44 15 7 O -0.59 -32.61 14.40 19.39 0.28 -32.34 15 8 O -0.26 -14.54 8.42 9.40 0.08 -14.46 15 9 C -0.40 -25.53 10.11 67.94 0.69 -24.84 15 10 H 0.06 4.12 7.09 -2.91 -0.02 4.09 15 11 C 0.01 0.75 5.49 84.87 0.47 1.22 15 12 N -0.92 -57.40 13.96 21.62 0.30 -57.10 15 13 Si 0.98 45.05 28.62 68.60 1.96 47.01 15 14 H -0.26 -11.34 7.11 99.48 0.71 -10.64 15 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 16 H -0.25 -10.76 7.11 99.48 0.71 -10.06 15 17 C 0.44 13.56 7.98 132.76 1.06 14.62 15 18 N -0.81 -19.63 9.02 -54.52 -0.49 -20.12 15 19 H 0.09 0.86 8.14 -2.39 -0.02 0.84 15 20 H 0.11 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.11 0.71 7.46 -2.38 -0.02 0.70 15 22 H 0.20 6.44 8.06 -2.90 -0.02 6.42 15 23 H 0.29 16.11 8.31 -92.70 -0.77 15.34 15 24 H 0.43 12.47 7.02 -92.71 -0.65 11.82 15 25 H 0.42 5.78 8.04 -92.71 -0.75 5.03 15 Total: -1.00 -80.11 235.16 4.92 -75.19 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.15 Total: 13.85 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.09 Total: 10.20 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -2.35 Total: -99.45 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: 0.36 Total: -46.80 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.96 Total: 47.01 kcal Total: -80.11 4.92 -75.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307233850.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -80.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds