Wall clock time and date at job start Sun Mar 29 2020 21:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.62579 * 2 1 4 4 C 1.54983 * 110.56782 * 122.83711 * 2 1 3 5 5 C 1.54887 * 102.33213 * 155.64944 * 4 2 1 6 6 C 1.51843 * 104.43625 * 322.37527 * 5 4 2 7 7 C 1.33147 * 126.34274 * 203.77188 * 6 5 4 8 8 C 1.46880 * 120.00097 * 359.74081 * 7 6 5 9 9 O 1.21573 * 119.99777 * 0.28225 * 8 7 6 10 10 O 1.34805 * 119.99961 * 180.27426 * 8 7 6 11 11 C 1.34836 * 116.99711 * 180.02562 * 10 8 7 12 12 H 1.08006 * 120.00328 * 0.02562 * 11 10 8 13 13 C 1.38830 * 120.00235 * 180.02562 * 11 10 8 14 14 N 1.31407 * 119.99416 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00290 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47325 * 89.99869 * 15 13 11 17 17 H 1.48499 * 109.47000 * 209.99947 * 15 13 11 18 18 H 1.48494 * 109.47107 * 329.99639 * 15 13 11 19 19 C 1.51446 * 107.31661 * 24.03166 * 6 5 4 20 20 H 1.09003 * 109.47044 * 297.16713 * 1 2 3 21 21 H 1.09004 * 109.46960 * 57.15972 * 1 2 3 22 22 H 1.08999 * 109.47525 * 177.16381 * 1 2 3 23 23 H 1.08997 * 110.83154 * 37.44059 * 4 2 1 24 24 H 1.09006 * 110.83165 * 273.86259 * 4 2 1 25 25 H 1.09000 * 110.44060 * 203.63237 * 5 4 2 26 26 H 1.09008 * 110.54764 * 81.16788 * 5 4 2 27 27 H 1.08002 * 120.00289 * 180.02562 * 7 6 5 28 28 H 0.97008 * 119.99776 * 180.02562 * 14 13 11 29 29 H 1.08998 * 109.98588 * 118.75105 * 19 6 5 30 30 H 1.09002 * 109.98434 * 240.05901 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0745 -0.7868 1.2192 5 6 3.4813 -1.2164 0.7342 6 6 3.2911 -1.5444 -0.7361 7 6 4.0548 -2.3515 -1.4697 8 6 5.2140 -3.0183 -0.8624 9 8 5.4731 -2.8373 0.3116 10 8 5.9904 -3.8311 -1.6065 11 6 7.0380 -4.4122 -0.9877 12 1 7.2230 -4.2177 0.0585 13 6 7.8789 -5.2605 -1.6952 14 7 7.6541 -5.4967 -2.9682 15 14 9.3298 -6.0661 -0.8377 16 1 8.9055 -7.3690 -0.2654 17 1 10.4229 -6.2884 -1.8179 18 1 9.8144 -5.1812 0.2518 19 6 2.0756 -0.7785 -1.2153 20 1 -0.3633 0.4692 0.9143 21 1 -0.3633 0.5573 -0.8635 22 1 -0.3634 -1.0264 -0.0508 23 1 1.4534 -1.6581 1.4270 24 1 2.1464 -0.1426 2.0956 25 1 3.8197 -2.0970 1.2801 26 1 4.1930 -0.3992 0.8530 27 1 3.8246 -2.5123 -2.5126 28 1 8.2414 -6.0898 -3.4625 29 1 2.3602 -0.0855 -2.0070 30 1 1.3186 -1.4721 -1.5811 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307263756.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:56 Heat of formation + Delta-G solvation = -85.327450 kcal Electronic energy + Delta-G solvation = -13446.289971 eV Core-core repulsion = 11013.462602 eV Total energy + Delta-G solvation = -2432.827369 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10371 -38.01506 -35.12714 -32.28174 -32.08806 -29.60259 -27.29554 -25.33905 -23.63567 -20.97814 -19.90607 -17.88611 -17.63902 -16.45214 -15.54416 -14.66268 -14.38541 -14.21245 -14.03584 -13.48947 -13.01655 -12.76610 -12.30131 -11.93175 -11.60608 -11.40084 -11.16978 -10.86059 -10.70205 -10.65799 -10.47930 -10.38140 -10.28611 -9.75687 -8.76906 -8.62375 -8.50095 -6.38464 -4.01926 1.95496 3.18626 3.21023 3.27593 3.98736 4.14672 4.44356 4.78128 4.90134 4.99481 5.20986 5.33409 5.47240 5.58660 5.61651 5.74419 5.79360 5.86589 5.94488 6.10283 6.12838 6.27775 6.42800 6.52363 6.69862 6.90323 7.24180 7.46544 8.00343 8.80760 9.10494 9.94689 10.79905 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.082969 B = 0.006078 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.395114 B = 4605.520523 C = 4871.574671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.068 4.068 7 C -0.159 4.159 8 C 0.428 3.572 9 O -0.556 6.556 10 O -0.212 6.212 11 C -0.376 4.376 12 H 0.096 0.904 13 C 0.039 3.961 14 N -0.864 5.864 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.091 4.091 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.269 0.731 29 H 0.076 0.924 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 8.372 3.549 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.160 4.160 5 C -0.134 4.134 6 C -0.069 4.069 7 C -0.178 4.178 8 C 0.277 3.723 9 O -0.456 6.456 10 O -0.119 6.119 11 C -0.452 4.452 12 H 0.113 0.887 13 C -0.164 4.164 14 N -0.501 5.501 15 Si 0.768 3.232 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.191 1.191 19 C -0.128 4.128 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.544 8.279 3.645 13.892 hybrid contribution 0.728 -0.433 0.179 0.866 sum -9.816 7.845 3.824 13.135 Atomic orbital electron populations 1.21800 0.94989 1.01837 1.01399 1.21983 0.95285 0.99247 0.95148 0.90685 1.22660 0.96796 0.99489 0.97016 1.21636 0.95861 1.02998 0.92910 1.22662 0.94255 0.93806 0.96166 1.21314 0.95785 1.00465 1.00244 1.21006 0.84702 0.81190 0.85387 1.90582 1.72542 1.64693 1.17759 1.83948 1.35800 1.50991 1.41138 1.21262 1.02515 1.25051 0.96374 0.88655 1.25367 0.98779 0.96639 0.95666 1.69989 1.37771 1.34694 1.07603 0.85666 0.79422 0.79366 0.78702 1.19891 1.20338 1.19090 1.21314 0.95271 0.98209 0.97962 0.92712 0.92825 0.92536 0.91427 0.91569 0.88354 0.90410 0.85405 0.92078 0.90538 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.15 37.16 0.34 -0.96 16 2 C -0.10 -1.09 3.48 -88.90 -0.31 -1.40 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.53 6.38 -24.69 -0.16 -1.69 16 5 C -0.10 -1.62 5.41 -26.32 -0.14 -1.76 16 6 C -0.07 -1.16 6.15 -100.19 -0.62 -1.78 16 7 C -0.16 -3.24 10.06 -37.86 -0.38 -3.62 16 8 C 0.43 11.17 7.84 34.23 0.27 11.44 16 9 O -0.56 -15.19 13.01 -19.32 -0.25 -15.44 16 10 O -0.21 -6.35 9.75 -21.78 -0.21 -6.56 16 11 C -0.38 -11.44 9.65 30.95 0.30 -11.14 16 12 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 13 C 0.04 1.14 5.50 -17.51 -0.10 1.04 16 14 N -0.86 -25.87 13.67 55.49 0.76 -25.11 16 15 Si 0.94 21.67 29.55 -169.99 -5.02 16.64 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.09 -1.15 6.21 -26.84 -0.17 -1.32 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 23 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 1.92 6.28 -51.93 -0.33 1.60 16 26 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 27 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.92 7.79 -51.93 -0.40 0.52 16 LS Contribution 259.40 15.07 3.91 3.91 Total: -1.00 -32.77 259.40 -5.80 -38.58 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.02 Total: -0.82 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.96 Total: -11.19 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.76 Total: -25.11 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.46 Total: -22.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.77 -5.80 -38.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307263756.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.749 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds