Wall clock time and date at job start Sun Mar 29 2020 21:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47000 * 270.00585 * 3 2 1 5 5 H 1.48496 * 109.46906 * 30.00219 * 3 2 1 6 6 H 1.48500 * 109.47103 * 150.00350 * 3 2 1 7 7 C 1.37878 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99850 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00364 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47378 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99896 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00087 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99526 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99329 * 179.97438 * 13 11 10 15 15 C 1.54637 * 111.03377 * 154.99812 * 14 13 11 16 16 C 1.51103 * 104.72289 * 93.39817 * 15 14 13 17 17 C 1.30521 * 111.10533 * 16.43786 * 16 15 14 18 18 C 1.51107 * 111.10409 * 359.97438 * 17 16 15 19 19 H 0.96997 * 119.99748 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.46612 * 59.99740 * 9 7 2 21 21 H 1.09000 * 109.46669 * 300.00097 * 9 7 2 22 22 H 0.96998 * 119.99761 * 0.02562 * 10 9 7 23 23 H 0.96994 * 119.99993 * 359.97438 * 13 11 10 24 24 H 1.08998 * 110.94508 * 31.01502 * 14 13 11 25 25 H 1.08997 * 110.38971 * 212.21034 * 15 14 13 26 26 H 1.09004 * 110.38871 * 334.59154 * 15 14 13 27 27 H 1.08001 * 124.44506 * 196.41222 * 16 15 14 28 28 H 1.07998 * 124.44978 * 180.02562 * 17 16 15 29 29 H 1.08996 * 110.38038 * 224.74997 * 18 17 16 30 30 H 1.09001 * 110.48291 * 102.42232 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8976 -0.0014 13 7 5.7741 -4.0924 -0.0013 14 6 7.2144 -4.3601 -0.0018 15 6 7.5213 -5.7477 0.6078 16 6 7.5691 -6.6853 -0.5762 17 6 7.6917 -6.0239 -1.6948 18 6 7.7454 -4.5349 -1.4433 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6805 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 5.1437 -4.8296 -0.0013 24 1 7.7571 -3.5737 0.5227 25 1 8.4834 -5.7332 1.1197 26 1 6.7289 -6.0442 1.2951 27 1 7.5100 -7.7614 -0.5061 28 1 7.7465 -6.4808 -2.6718 29 1 7.1059 -4.0071 -2.1508 30 1 8.7709 -4.1726 -1.5161 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307281387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:03 Heat of formation + Delta-G solvation = -16.522941 kcal Electronic energy + Delta-G solvation = -13434.523003 eV Core-core repulsion = 11036.971973 eV Total energy + Delta-G solvation = -2397.551030 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.79213 -38.03020 -34.22443 -33.26035 -32.21242 -28.56857 -28.25374 -27.04023 -22.39431 -20.71001 -20.16014 -18.89075 -18.19362 -16.44564 -16.26218 -15.79285 -14.76252 -14.59790 -13.99716 -13.26183 -12.95006 -12.88961 -12.31506 -12.24675 -12.21164 -11.54978 -11.36570 -11.20893 -10.94656 -10.73135 -9.93950 -9.58925 -9.42803 -9.04769 -8.82301 -8.72241 -7.98201 -6.18358 -4.20038 2.14861 3.27640 3.31445 3.38395 3.45850 3.81920 4.36817 4.51557 4.63579 4.98430 5.17321 5.20199 5.21039 5.44248 5.60401 5.66170 5.81704 5.94997 6.08367 6.40923 6.76721 6.78678 6.89134 7.15092 7.28595 7.44811 7.62966 8.31808 8.72908 8.85371 9.25392 9.43722 10.93704 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.067708 B = 0.006124 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.439737 B = 4570.711528 C = 4753.257806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.605 6.605 13 N -0.744 5.744 14 C 0.160 3.840 15 C -0.108 4.108 16 C -0.177 4.177 17 C -0.158 4.158 18 C -0.118 4.118 19 H 0.267 0.733 20 H 0.023 0.977 21 H 0.018 0.982 22 H 0.392 0.608 23 H 0.393 0.607 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.353 -12.135 -0.680 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.484 6.484 13 N -0.400 5.400 14 C 0.054 3.946 15 C -0.146 4.146 16 C -0.195 4.195 17 C -0.176 4.176 18 C -0.156 4.156 19 H 0.077 0.923 20 H 0.041 0.959 21 H 0.036 0.964 22 H 0.225 0.775 23 H 0.227 0.773 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.881 -11.093 -0.664 17.782 hybrid contribution -0.318 0.058 -0.148 0.356 sum 13.563 -11.036 -0.812 17.504 Atomic orbital electron populations 1.69882 1.06219 1.27386 1.49661 1.24782 0.94779 0.99160 0.93905 0.86808 0.80608 0.83179 0.79052 1.19861 1.20949 1.18430 1.21107 0.88607 0.95184 1.53090 0.90319 1.19352 0.94782 0.77713 0.96613 1.45398 1.03760 1.11014 1.77355 1.16137 0.83526 0.82773 0.78089 1.90853 1.55379 1.43229 1.58967 1.45099 1.06927 1.06510 1.81476 1.21461 0.81243 0.96660 0.95250 1.21696 1.02507 0.93157 0.97244 1.23234 1.02339 0.99048 0.94868 1.23333 0.99973 0.95975 0.98317 1.21898 1.01770 0.93969 0.97993 0.92299 0.95927 0.96393 0.77481 0.77342 0.88218 0.89511 0.90445 0.85964 0.86102 0.90483 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 9 C 0.24 6.03 4.50 -5.19 -0.02 6.00 16 10 N -0.72 -15.22 5.55 -66.41 -0.37 -15.59 16 11 C 0.69 13.97 8.57 -86.92 -0.74 13.23 16 12 O -0.60 -14.49 15.98 5.29 0.08 -14.40 16 13 N -0.74 -11.02 5.13 -57.01 -0.29 -11.31 16 14 C 0.16 2.07 3.53 -66.22 -0.23 1.84 16 15 C -0.11 -1.05 6.44 -26.83 -0.17 -1.22 16 16 C -0.18 -1.63 10.77 -35.69 -0.38 -2.01 16 17 C -0.16 -1.59 10.78 -35.69 -0.38 -1.97 16 18 C -0.12 -1.41 6.54 -26.84 -0.18 -1.59 16 19 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 20 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 21 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 22 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 23 H 0.39 4.85 8.68 -40.82 -0.35 4.49 16 24 H 0.10 1.44 7.54 -51.93 -0.39 1.05 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 259.32 15.07 3.91 3.91 Total: -1.00 -32.48 259.32 -7.08 -39.56 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.96 Total: 5.85 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.56 Total: 0.94 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.11 Total: -52.93 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.48 -7.08 -39.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307281387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.037 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds