Wall clock time and date at job start Sun Mar 29 2020 21:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47000 * 270.00585 * 3 2 1 5 5 H 1.48496 * 109.46906 * 30.00219 * 3 2 1 6 6 H 1.48500 * 109.47103 * 150.00350 * 3 2 1 7 7 C 1.37878 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99850 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00364 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47378 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99896 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00087 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99526 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99329 * 179.97438 * 13 11 10 15 15 C 1.54637 * 111.03377 * 154.99812 * 14 13 11 16 16 C 1.51103 * 104.72289 * 93.39817 * 15 14 13 17 17 C 1.30521 * 111.10533 * 16.43786 * 16 15 14 18 18 C 1.51107 * 111.10409 * 359.97438 * 17 16 15 19 19 H 0.96997 * 119.99748 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.46612 * 59.99740 * 9 7 2 21 21 H 1.09000 * 109.46669 * 300.00097 * 9 7 2 22 22 H 0.96998 * 119.99761 * 0.02562 * 10 9 7 23 23 H 0.96994 * 119.99993 * 359.97438 * 13 11 10 24 24 H 1.08998 * 110.94508 * 31.01502 * 14 13 11 25 25 H 1.08997 * 110.38971 * 212.21034 * 15 14 13 26 26 H 1.09004 * 110.38871 * 334.59154 * 15 14 13 27 27 H 1.08001 * 124.44506 * 196.41222 * 16 15 14 28 28 H 1.07998 * 124.44978 * 180.02562 * 17 16 15 29 29 H 1.08996 * 110.38038 * 224.74997 * 18 17 16 30 30 H 1.09001 * 110.48291 * 102.42232 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8976 -0.0014 13 7 5.7741 -4.0924 -0.0013 14 6 7.2144 -4.3601 -0.0018 15 6 7.5213 -5.7477 0.6078 16 6 7.5691 -6.6853 -0.5762 17 6 7.6917 -6.0239 -1.6948 18 6 7.7454 -4.5349 -1.4433 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6805 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 5.1437 -4.8296 -0.0013 24 1 7.7571 -3.5737 0.5227 25 1 8.4834 -5.7332 1.1197 26 1 6.7289 -6.0442 1.2951 27 1 7.5100 -7.7614 -0.5061 28 1 7.7465 -6.4808 -2.6718 29 1 7.1059 -4.0071 -2.1508 30 1 8.7709 -4.1726 -1.5161 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307281387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:02 Heat of formation + Delta-G solvation = -40.420750 kcal Electronic energy + Delta-G solvation = -13435.559290 eV Core-core repulsion = 11036.971973 eV Total energy + Delta-G solvation = -2398.587317 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.17243 -39.22709 -36.13077 -34.72527 -34.16574 -30.17642 -29.10871 -28.45151 -24.30432 -22.21649 -21.43272 -20.09571 -19.48890 -18.34086 -17.57370 -16.83332 -16.51700 -16.31034 -15.64914 -14.96712 -14.50576 -14.34660 -13.98197 -13.62900 -13.03375 -12.98903 -12.75513 -12.59007 -12.22745 -12.05672 -11.91933 -11.64932 -11.30238 -10.91146 -10.29187 -9.82528 -9.65534 -8.39311 -6.46146 1.34200 1.35920 1.41169 1.49570 1.87579 2.21015 2.29626 2.96376 3.49017 3.65910 3.75927 4.25952 4.41689 4.54813 4.71181 4.81980 4.83757 4.98186 5.02134 5.06181 5.14565 5.25707 5.55344 5.64648 5.67123 5.99235 6.03947 6.30001 6.56026 7.14989 7.27796 7.68057 8.75517 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.067708 B = 0.006124 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.439737 B = 4570.711528 C = 4753.257806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.644 6.644 13 N -0.722 5.722 14 C 0.148 3.852 15 C -0.101 4.101 16 C -0.163 4.163 17 C -0.171 4.171 18 C -0.117 4.117 19 H 0.273 0.727 20 H 0.010 0.990 21 H 0.008 0.992 22 H 0.404 0.596 23 H 0.408 0.592 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.148 0.852 28 H 0.135 0.865 29 H 0.051 0.949 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.540 -13.308 -0.534 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.376 5.376 11 C 0.394 3.606 12 O -0.527 6.527 13 N -0.378 5.378 14 C 0.042 3.958 15 C -0.138 4.138 16 C -0.181 4.181 17 C -0.189 4.189 18 C -0.156 4.156 19 H 0.082 0.918 20 H 0.028 0.972 21 H 0.026 0.974 22 H 0.240 0.760 23 H 0.244 0.756 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.165 0.835 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.074 -12.342 -0.521 19.489 hybrid contribution -0.675 0.327 -0.181 0.772 sum 14.399 -12.015 -0.701 18.766 Atomic orbital electron populations 1.69978 1.07673 1.28636 1.50743 1.25576 0.95534 1.02637 0.93537 0.85850 0.79242 0.79280 0.79476 1.18983 1.19680 1.18528 1.21281 0.89884 0.94612 1.52639 0.92296 1.18944 0.93036 0.79854 0.95466 1.45122 1.04669 1.09899 1.77928 1.16244 0.82642 0.83958 0.77711 1.90822 1.56171 1.45016 1.60711 1.44943 1.08312 1.04946 1.79635 1.21705 0.79492 0.98276 0.96329 1.21684 1.03754 0.90752 0.97636 1.23428 1.00606 1.00100 0.93924 1.23334 1.01577 0.94452 0.99544 1.21845 1.01536 0.95653 0.96546 0.91812 0.97165 0.97383 0.76038 0.75552 0.90093 0.87730 0.89422 0.83469 0.84705 0.92986 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 2 C 0.03 1.57 5.47 84.66 0.46 2.03 16 3 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 4 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 7 C -0.55 -30.70 9.83 25.60 0.25 -30.44 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.44 16 9 C 0.25 12.75 4.50 85.63 0.39 13.13 16 10 N -0.72 -30.25 5.55 -482.30 -2.68 -32.93 16 11 C 0.69 27.68 8.57 179.05 1.53 29.22 16 12 O -0.64 -31.05 15.98 -3.98 -0.06 -31.12 16 13 N -0.72 -20.54 5.13 -452.53 -2.32 -22.86 16 14 C 0.15 3.62 3.53 46.10 0.16 3.78 16 15 C -0.10 -1.64 6.44 30.53 0.20 -1.45 16 16 C -0.16 -2.41 10.77 26.27 0.28 -2.13 16 17 C -0.17 -3.01 10.78 26.27 0.28 -2.73 16 18 C -0.12 -2.70 6.54 30.53 0.20 -2.50 16 19 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 20 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 21 H 0.01 0.43 7.57 -2.39 -0.02 0.42 16 22 H 0.40 14.76 8.34 -92.71 -0.77 13.99 16 23 H 0.41 9.25 8.68 -92.71 -0.80 8.44 16 24 H 0.08 2.32 7.54 -2.39 -0.02 2.30 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.30 8.08 -2.38 -0.02 1.28 16 27 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 28 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -69.44 259.32 0.40 -69.05 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.48 Total: 18.15 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 3.76 Total: 8.91 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.70 Total: -111.57 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.06 Total: -31.12 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -69.44 0.40 -69.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307281387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.628 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds