Wall clock time and date at job start Sun Mar 29 2020 21:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31396 * 1 3 3 Si 1.86801 * 120.00415 * 2 1 4 4 H 1.48503 * 109.47092 * 270.00169 * 3 2 1 5 5 H 1.48499 * 109.46629 * 30.00137 * 3 2 1 6 6 H 1.48499 * 109.47015 * 150.00113 * 3 2 1 7 7 C 1.38842 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99782 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00328 * 0.02562 * 7 2 1 10 10 C 1.34708 * 117.00470 * 180.02562 * 9 7 2 11 11 O 1.21491 * 119.99786 * 359.97438 * 10 9 7 12 12 C 1.47810 * 120.00201 * 179.97438 * 10 9 7 13 13 C 1.39996 * 120.94773 * 0.29297 * 12 10 9 14 14 C 1.38013 * 119.02116 * 180.31694 * 13 12 10 15 15 N 1.31883 * 120.98971 * 359.65699 * 14 13 12 16 16 C 1.31726 * 122.11737 * 0.02562 * 15 14 13 17 17 C 1.38512 * 120.85665 * 0.02562 * 16 15 14 18 18 F 1.35104 * 120.54580 * 179.97438 * 17 16 15 19 19 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 20 20 H 1.07990 * 120.49248 * 359.97438 * 13 12 10 21 21 H 1.07997 * 119.50765 * 179.67250 * 14 13 12 22 22 H 1.07994 * 119.57393 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4400 0.7000 7 6 2.0081 -1.2024 -0.0005 8 1 3.0882 -1.2024 -0.0010 9 8 1.3340 -2.3701 -0.0016 10 6 2.0676 -3.4999 -0.0015 11 8 3.2808 -3.4364 -0.0010 12 6 1.3965 -4.8169 -0.0021 13 6 -0.0001 -4.9132 -0.0088 14 6 -0.5851 -6.1632 -0.0023 15 7 0.1511 -7.2574 0.0032 16 6 1.4677 -7.2157 0.0033 17 6 2.1401 -6.0047 -0.0018 18 9 3.4907 -5.9693 -0.0011 19 1 -0.4850 0.8401 0.0004 20 1 -0.6108 -4.0226 -0.0133 21 1 -1.6618 -6.2467 -0.0021 22 1 2.0302 -8.1376 0.0076 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307299253.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:28 Heat of formation + Delta-G solvation = -108.098870 kcal Electronic energy + Delta-G solvation = -13211.260021 eV Core-core repulsion = 10452.725899 eV Total energy + Delta-G solvation = -2758.534122 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 211.043 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -50.07759 -41.53122 -40.52899 -37.42378 -34.51258 -33.76854 -31.98061 -28.04574 -26.00307 -24.55066 -22.53293 -20.04467 -19.43071 -18.47238 -18.15219 -17.33401 -17.22676 -16.41474 -16.26713 -15.98788 -15.27070 -14.77156 -14.50293 -14.44454 -13.71065 -13.32047 -13.18773 -12.50804 -12.23304 -12.12462 -11.56019 -11.10072 -10.78435 -10.77792 -10.10589 -8.66575 -6.43214 -0.66594 -0.18014 1.31525 1.31973 1.49011 1.65485 1.95894 2.42725 2.55521 2.83805 2.91212 3.36529 3.55565 3.65636 4.11513 4.31504 4.72775 4.75998 4.89099 5.06110 5.44436 5.68838 6.43204 6.61611 6.77049 7.53328 8.52996 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.053990 B = 0.008596 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.494719 B = 3256.640642 C = 3765.288604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.004 3.996 3 Si 1.020 2.980 4 H -0.258 1.258 5 H -0.255 1.255 6 H -0.265 1.265 7 C -0.423 4.423 8 H 0.083 0.917 9 O -0.218 6.218 10 C 0.421 3.579 11 O -0.569 6.569 12 C -0.112 4.112 13 C -0.097 4.097 14 C 0.100 3.900 15 N -0.447 5.447 16 C 0.087 3.913 17 C 0.077 3.923 18 F -0.125 7.125 19 H 0.285 0.715 20 H 0.156 0.844 21 H 0.214 0.786 22 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 -9.063 -0.021 9.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.199 4.199 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.179 1.179 6 H -0.190 1.190 7 C -0.499 4.499 8 H 0.101 0.899 9 O -0.125 6.125 10 C 0.270 3.730 11 O -0.468 6.468 12 C -0.122 4.122 13 C -0.117 4.117 14 C -0.055 4.055 15 N -0.156 5.156 16 C -0.072 4.072 17 C 0.054 3.946 18 F -0.103 7.103 19 H 0.094 0.906 20 H 0.174 0.826 21 H 0.230 0.770 22 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.898 -9.678 -0.014 10.103 hybrid contribution 1.297 1.756 -0.009 2.183 sum -1.601 -7.922 -0.023 8.082 Atomic orbital electron populations 1.70010 1.07552 1.30024 1.44607 1.26591 0.96992 1.02153 0.94116 0.84593 0.77694 0.74145 0.79729 1.18253 1.17851 1.18965 1.21563 0.92477 0.80746 1.55067 0.89913 1.83862 1.39633 1.13715 1.75336 1.21328 0.85900 0.86304 0.79453 1.90650 1.16130 1.88243 1.51808 1.19983 0.96083 0.89848 1.06298 1.22677 0.91721 1.02132 0.95216 1.23415 1.02582 0.85309 0.94239 1.67730 1.05700 1.32494 1.09677 1.23361 0.90768 0.95716 0.97331 1.19242 0.77947 0.94683 1.02679 1.91545 1.28405 1.97188 1.93184 0.90575 0.82645 0.76971 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.99 13.67 21.64 0.30 -49.70 14 2 C 0.00 0.22 5.50 84.90 0.47 0.69 14 3 Si 1.02 42.16 29.55 68.60 2.03 44.19 14 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 14 5 H -0.25 -9.59 7.11 99.48 0.71 -8.89 14 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 14 7 C -0.42 -25.57 9.65 67.96 0.66 -24.92 14 8 H 0.08 5.12 6.86 -2.91 -0.02 5.10 14 9 O -0.22 -12.84 9.09 11.83 0.11 -12.74 14 10 C 0.42 22.56 7.86 70.35 0.55 23.12 14 11 O -0.57 -33.49 14.73 19.87 0.29 -33.20 14 12 C -0.11 -4.62 5.91 -19.86 -0.12 -4.74 14 13 C -0.10 -3.18 9.70 22.64 0.22 -2.96 14 14 C 0.10 2.42 11.17 84.63 0.94 3.37 14 15 N -0.45 -11.25 10.33 -195.84 -2.02 -13.27 14 16 C 0.09 2.24 11.17 84.77 0.95 3.19 14 17 C 0.08 2.71 7.34 22.80 0.17 2.88 14 18 F -0.12 -4.94 15.72 44.97 0.71 -4.23 14 19 H 0.28 14.41 8.31 -92.71 -0.77 13.64 14 20 H 0.16 5.26 7.71 -2.92 -0.02 5.24 14 21 H 0.21 3.19 8.06 -2.91 -0.02 3.16 14 22 H 0.21 3.66 8.06 -2.91 -0.02 3.63 14 Total: -1.00 -72.50 221.69 6.50 -65.99 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.26 Total: 2.32 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 3.84 Total: 0.63 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -1.73 Total: -62.97 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: 0.40 Total: -45.93 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.71 Total: -4.23 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -72.50 6.50 -65.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307299253.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.105 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds