Wall clock time and date at job start Sun Mar 29 2020 22:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30945 * 126.44863 * 2 1 4 4 C 1.35221 * 105.58041 * 180.14023 * 3 2 1 5 5 C 1.48446 * 126.40730 * 179.84969 * 4 3 2 6 6 O 1.21489 * 120.00099 * 359.71320 * 5 4 3 7 7 N 1.34777 * 120.00118 * 179.71764 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46928 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00621 * 13 11 9 15 15 H 1.48500 * 109.47411 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.47378 * 330.00637 * 13 11 9 17 17 N 1.30664 * 107.18723 * 359.58863 * 4 3 2 18 18 O 1.21292 * 110.11062 * 0.25846 * 17 4 3 19 19 H 1.09004 * 109.47248 * 180.29531 * 1 2 3 20 20 H 1.09002 * 109.47073 * 300.29434 * 1 2 3 21 21 H 1.09004 * 109.46956 * 60.29283 * 1 2 3 22 22 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 23 23 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 24 24 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 25 25 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2849 1.0533 0.0000 4 6 3.5484 0.5716 -0.0032 5 6 4.7972 1.3741 -0.0076 6 8 4.7395 2.5876 -0.0139 7 7 5.9952 0.7565 -0.0047 8 6 7.2277 1.5486 -0.0085 9 6 8.4184 0.6249 -0.0035 10 1 8.2717 -0.4451 0.0015 11 6 9.6949 1.1458 -0.0065 12 7 9.8735 2.4487 -0.0131 13 14 11.1709 0.0008 0.0004 14 1 11.5622 -0.3107 -1.3978 15 1 12.3051 0.6595 0.6968 16 1 10.8188 -1.2565 0.7077 17 7 3.4645 -0.7323 0.0040 18 8 2.3012 -1.0754 0.0060 19 1 -0.3634 -1.0277 0.0053 20 1 -0.3633 0.5184 0.8873 21 1 -0.3633 0.5093 -0.8926 22 1 6.0413 -0.2123 0.0006 23 1 7.2555 2.1730 -0.9016 24 1 7.2555 2.1816 0.8784 25 1 10.7716 2.8151 -0.0148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307308984.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:14 Heat of formation + Delta-G solvation = 27.691191 kcal Electronic energy + Delta-G solvation = -13164.459471 eV Core-core repulsion = 10567.566704 eV Total energy + Delta-G solvation = -2596.892767 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.65347 -38.90141 -35.76515 -34.40189 -33.59513 -32.36319 -29.11244 -27.67856 -25.23999 -23.13616 -22.37632 -20.09835 -18.30654 -18.23740 -16.94614 -15.87374 -15.32790 -14.65999 -14.53094 -14.40444 -13.70223 -13.53118 -13.01627 -12.29178 -12.14725 -12.04832 -11.49993 -11.16686 -11.02627 -10.92206 -10.38976 -10.04333 -9.66670 -9.46902 -8.82416 -8.08519 -6.21515 -4.29159 0.94579 1.79291 2.68282 3.11115 3.23152 3.29514 3.33020 3.57247 3.88861 4.26720 4.46455 4.94213 5.02399 5.14920 5.15861 5.39208 5.59045 5.91888 7.11824 7.17560 7.38866 7.55612 7.86675 8.00483 8.41701 8.60680 8.84288 9.36974 10.88662 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.073331 B = 0.006095 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.741155 B = 4592.595263 C = 4953.889029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.169 3.831 3 N -0.443 5.443 4 C 0.147 3.853 5 C 0.587 3.413 6 O -0.515 6.515 7 N -0.686 5.686 8 C 0.249 3.751 9 C -0.546 4.546 10 H 0.065 0.935 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.907 3.093 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 N -0.352 5.352 18 O 0.089 5.911 19 H 0.097 0.903 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.399 0.601 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.239 -7.689 0.032 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 N -0.177 5.177 4 C -0.127 4.127 5 C 0.366 3.634 6 O -0.389 6.389 7 N -0.335 5.335 8 C 0.129 3.871 9 C -0.585 4.585 10 H 0.084 0.916 11 C -0.139 4.139 12 N -0.522 5.522 13 Si 0.734 3.266 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.197 1.197 17 N -0.059 5.059 18 O 0.023 5.977 19 H 0.116 0.884 20 H 0.122 0.878 21 H 0.122 0.878 22 H 0.233 0.767 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.222 -6.661 0.039 16.615 hybrid contribution 0.693 -1.062 -0.005 1.268 sum -14.529 -7.723 0.033 16.454 Atomic orbital electron populations 1.20389 0.79864 1.05556 1.05826 1.28987 0.99103 0.80365 0.96760 1.72021 0.99431 1.28175 1.18095 1.26155 0.95662 0.87697 1.03228 1.16514 0.80824 0.86270 0.79820 1.90801 1.85836 1.12243 1.50023 1.46399 1.05683 1.11287 1.70162 1.19321 0.77847 0.91463 0.98426 1.21184 0.90389 0.93147 1.53741 0.91644 1.24942 0.99107 0.95354 0.94492 1.69967 1.22800 1.10830 1.48554 0.86359 0.81505 0.80447 0.78305 1.20368 1.20911 1.19663 1.74936 0.97363 1.15324 1.18243 1.85277 1.11413 1.35997 1.65020 0.88405 0.87776 0.87776 0.76740 0.94751 0.94747 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.00 0.38 0.07 15 2 C 0.17 2.00 8.50 -13.00 -0.11 1.88 15 3 N -0.44 -7.49 11.57 -9.94 -0.11 -7.61 15 4 C 0.15 2.80 8.01 -156.19 -1.25 1.55 15 5 C 0.59 13.26 7.85 -12.05 -0.09 13.17 15 6 O -0.52 -13.33 17.10 5.38 0.09 -13.24 15 7 N -0.69 -15.62 5.55 -62.23 -0.35 -15.97 15 8 C 0.25 6.70 5.43 -5.19 -0.03 6.67 15 9 C -0.55 -15.00 9.28 -34.44 -0.32 -15.32 15 10 H 0.07 1.70 7.60 -52.48 -0.40 1.30 15 11 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 12 N -0.88 -25.99 13.29 55.43 0.74 -25.25 15 13 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 15 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 17 N -0.35 -5.86 11.89 30.93 0.37 -5.50 15 18 O 0.09 1.17 11.29 17.99 0.20 1.38 15 19 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 15 20 H 0.10 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.10 0.43 8.14 -51.93 -0.42 0.01 15 22 H 0.40 8.20 8.05 -40.82 -0.33 7.87 15 23 H 0.03 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.03 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 241.24 15.07 3.64 3.64 Total: -1.00 -33.50 241.24 -3.95 -37.45 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -1.98 Total: -0.57 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -1.52 Total: 9.74 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.64 Total: -54.32 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.30 Total: -11.87 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.50 -3.95 -37.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307308984.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.140 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds