Wall clock time and date at job start Sun Mar 29 2020 22:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30945 * 126.44863 * 2 1 4 4 C 1.35221 * 105.58041 * 180.14023 * 3 2 1 5 5 C 1.48446 * 126.40730 * 179.84969 * 4 3 2 6 6 O 1.21489 * 120.00099 * 359.71320 * 5 4 3 7 7 N 1.34777 * 120.00118 * 179.71764 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46928 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00621 * 13 11 9 15 15 H 1.48500 * 109.47411 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.47378 * 330.00637 * 13 11 9 17 17 N 1.30664 * 107.18723 * 359.58863 * 4 3 2 18 18 O 1.21292 * 110.11062 * 0.25846 * 17 4 3 19 19 H 1.09004 * 109.47248 * 180.29531 * 1 2 3 20 20 H 1.09002 * 109.47073 * 300.29434 * 1 2 3 21 21 H 1.09004 * 109.46956 * 60.29283 * 1 2 3 22 22 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 23 23 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 24 24 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 25 25 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2849 1.0533 0.0000 4 6 3.5484 0.5716 -0.0032 5 6 4.7972 1.3741 -0.0076 6 8 4.7395 2.5876 -0.0139 7 7 5.9952 0.7565 -0.0047 8 6 7.2277 1.5486 -0.0085 9 6 8.4184 0.6249 -0.0035 10 1 8.2717 -0.4451 0.0015 11 6 9.6949 1.1458 -0.0065 12 7 9.8735 2.4487 -0.0131 13 14 11.1709 0.0008 0.0004 14 1 11.5622 -0.3107 -1.3978 15 1 12.3051 0.6595 0.6968 16 1 10.8188 -1.2565 0.7077 17 7 3.4645 -0.7323 0.0040 18 8 2.3012 -1.0754 0.0060 19 1 -0.3634 -1.0277 0.0053 20 1 -0.3633 0.5184 0.8873 21 1 -0.3633 0.5093 -0.8926 22 1 6.0413 -0.2123 0.0006 23 1 7.2555 2.1730 -0.9016 24 1 7.2555 2.1816 0.8784 25 1 10.7716 2.8151 -0.0148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307308984.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:14 Heat of formation + Delta-G solvation = -0.410631 kcal Electronic energy + Delta-G solvation = -13165.678058 eV Core-core repulsion = 10567.566704 eV Total energy + Delta-G solvation = -2598.111353 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.90226 -40.76165 -37.03228 -36.39565 -34.89127 -34.25393 -30.15279 -29.45024 -26.90215 -24.69422 -23.99708 -21.80964 -19.81115 -19.53660 -18.51999 -17.77036 -17.19355 -16.42812 -16.32486 -15.63455 -15.03011 -14.23214 -14.22632 -14.21324 -14.07367 -13.06882 -12.99711 -12.84885 -12.73322 -12.39366 -12.29745 -11.62204 -11.52334 -11.18273 -10.89249 -10.14493 -8.34887 -6.52513 -0.30681 0.55188 1.40517 1.44083 1.51687 1.58179 1.77724 1.86177 2.34904 2.66479 3.00197 3.01702 3.78737 4.25908 4.58351 4.69774 4.86328 4.94578 5.09783 5.16399 5.19072 5.48798 5.72017 6.39963 6.55175 6.88206 6.94559 7.20841 8.77290 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.073331 B = 0.006095 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.741155 B = 4592.595263 C = 4953.889029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.199 3.801 3 N -0.484 5.484 4 C 0.119 3.881 5 C 0.589 3.411 6 O -0.558 6.558 7 N -0.681 5.681 8 C 0.265 3.735 9 C -0.563 4.563 10 H 0.082 0.918 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.988 3.012 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.258 1.258 17 N -0.352 5.352 18 O 0.114 5.886 19 H 0.135 0.865 20 H 0.122 0.878 21 H 0.122 0.878 22 H 0.411 0.589 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.602 -10.196 0.044 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.021 4.021 3 N -0.218 5.218 4 C -0.154 4.154 5 C 0.371 3.629 6 O -0.435 6.435 7 N -0.331 5.331 8 C 0.144 3.856 9 C -0.600 4.600 10 H 0.100 0.900 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.810 3.190 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.181 1.181 17 N -0.055 5.055 18 O 0.042 5.958 19 H 0.153 0.847 20 H 0.140 0.860 21 H 0.140 0.860 22 H 0.247 0.753 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.597 -9.180 0.050 18.967 hybrid contribution 0.900 -0.315 -0.010 0.953 sum -15.698 -9.495 0.041 18.346 Atomic orbital electron populations 1.20933 0.74754 1.08575 1.07345 1.30208 1.00757 0.78373 0.92736 1.71986 0.99005 1.30321 1.20446 1.25288 0.94957 0.88270 1.06931 1.16853 0.81832 0.86103 0.78141 1.90759 1.86819 1.14287 1.51602 1.46099 1.04961 1.11519 1.70542 1.18829 0.79977 0.91416 0.95397 1.21535 0.90678 0.93898 1.53913 0.89993 1.26041 1.02583 0.97053 0.93506 1.70114 1.23879 1.13161 1.49297 0.85115 0.76844 0.78290 0.78737 1.19427 1.20560 1.18144 1.74915 0.99219 1.14046 1.17331 1.85258 1.10497 1.36057 1.63997 0.84669 0.85992 0.85981 0.75295 0.98009 0.98005 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.23 0.75 0.41 15 2 C 0.20 4.11 8.50 88.36 0.75 4.86 15 3 N -0.48 -15.93 11.57 -302.79 -3.50 -19.43 15 4 C 0.12 4.51 8.01 137.33 1.10 5.61 15 5 C 0.59 27.67 7.85 86.96 0.68 28.35 15 6 O -0.56 -30.45 17.10 -3.68 -0.06 -30.51 15 7 N -0.68 -32.11 5.55 -469.10 -2.60 -34.72 15 8 C 0.27 14.98 5.43 85.63 0.46 15.44 15 9 C -0.56 -31.31 9.28 25.60 0.24 -31.07 15 10 H 0.08 4.19 7.60 -2.91 -0.02 4.17 15 11 C 0.01 0.47 5.46 84.65 0.46 0.94 15 12 N -0.93 -55.76 13.29 21.45 0.28 -55.47 15 13 Si 0.99 42.66 29.54 68.60 2.03 44.68 15 14 H -0.27 -11.20 7.11 99.48 0.71 -10.50 15 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 16 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 17 N -0.35 -11.27 11.89 -59.37 -0.71 -11.97 15 18 O 0.11 2.70 11.29 74.44 0.84 3.54 15 19 H 0.13 -0.12 8.14 -2.38 -0.02 -0.14 15 20 H 0.12 0.45 8.14 -2.39 -0.02 0.43 15 21 H 0.12 0.44 8.14 -2.39 -0.02 0.42 15 22 H 0.41 17.11 8.05 -92.71 -0.75 16.36 15 23 H 0.00 0.12 8.14 -2.38 -0.02 0.10 15 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 15 25 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 Total: -1.00 -76.12 241.24 1.21 -74.91 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.48 Total: 4.43 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 4.45 Total: 24.54 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -6.53 Total: -121.59 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.78 Total: -26.98 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -76.12 1.21 -74.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307308984.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.498 kcal (2) G-P(sol) polarization free energy of solvation -76.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds