Wall clock time and date at job start Sun Mar 29 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47523 * 2 1 4 4 N 1.46502 * 109.46874 * 120.00221 * 2 1 3 5 5 C 1.34775 * 119.99549 * 274.99565 * 4 2 1 6 6 O 1.21684 * 120.00343 * 359.97438 * 5 4 2 7 7 C 1.46380 * 119.99796 * 180.02562 * 5 4 2 8 8 H 1.08004 * 119.99704 * 0.02562 * 7 5 4 9 9 C 1.40040 * 120.00103 * 179.97438 * 7 5 4 10 10 N 1.30670 * 120.00158 * 0.02562 * 9 7 5 11 11 Si 1.86804 * 120.00136 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47071 * 60.00524 * 11 9 7 13 13 H 1.48498 * 109.47148 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47051 * 300.00569 * 11 9 7 15 15 C 1.50700 * 109.46772 * 239.99840 * 2 1 3 16 16 N 1.34495 * 126.29011 * 105.00359 * 15 2 1 17 17 C 1.31128 * 105.61627 * 179.73541 * 16 15 2 18 18 O 1.33639 * 106.89861 * 0.02562 * 17 16 15 19 19 N 1.21303 * 109.81253 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.46993 * 59.99583 * 1 2 3 21 21 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46685 * 300.00250 * 1 2 3 23 23 H 0.96999 * 120.00017 * 94.99188 * 4 2 1 24 24 H 0.96998 * 120.00566 * 179.97438 * 10 9 7 25 25 H 1.07995 * 126.54846 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1625 2.4116 7 6 2.6355 -0.7082 3.5522 8 1 2.8930 -1.7559 3.5034 9 6 2.7698 -0.0094 4.7583 10 7 2.4586 1.2583 4.8172 11 14 3.3937 -0.8897 6.2833 12 1 4.7551 -1.4234 6.0245 13 1 3.4435 0.0645 7.4200 14 1 2.4781 -2.0100 6.6176 15 6 2.0323 -0.7105 -1.2305 16 7 2.5622 -0.1322 -2.3230 17 6 2.8634 -1.1181 -3.1333 18 8 2.5111 -2.2498 -2.5160 19 7 2.0378 -1.9947 -1.4286 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.2489 -1.6319 1.1526 24 1 2.5513 1.7423 5.6527 25 1 3.3100 -1.0320 -4.1128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307387520.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:11 Heat of formation + Delta-G solvation = 29.387705 kcal Electronic energy + Delta-G solvation = -13565.266559 eV Core-core repulsion = 10968.447358 eV Total energy + Delta-G solvation = -2596.819201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.49784 -37.80684 -35.88396 -34.02417 -32.46500 -31.63000 -29.61228 -26.16927 -24.62903 -23.97606 -21.50642 -19.46927 -18.17061 -17.93237 -16.99927 -15.76558 -15.37426 -14.63809 -14.16780 -13.40138 -13.34301 -12.46397 -12.34728 -12.00357 -11.69623 -11.40101 -11.12173 -11.10109 -10.96907 -10.69549 -10.48735 -10.27379 -9.94483 -8.87277 -7.70627 -7.66626 -6.21771 -4.67720 1.30483 2.38206 3.10189 3.15707 3.20314 3.22425 3.79070 4.09996 4.27707 4.55438 4.84834 5.22404 5.58315 5.70616 5.85597 5.93571 6.02278 6.19432 6.44855 6.70667 7.41140 7.82398 7.96983 8.27835 8.32217 8.99318 9.43991 10.54872 10.72658 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.055211 B = 0.007477 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.023572 B = 3744.156749 C = 3998.498315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.240 3.760 3 H 0.106 0.894 4 N -0.758 5.758 5 C 0.557 3.443 6 O -0.577 6.577 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.766 5.766 11 Si 0.910 3.090 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.267 1.267 15 C 0.178 3.822 16 N -0.479 5.479 17 C 0.147 3.853 18 O 0.074 5.926 19 N -0.376 5.376 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.079 0.921 23 H 0.385 0.615 24 H 0.270 0.730 25 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -5.692 -12.128 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.131 3.869 3 H 0.124 0.876 4 N -0.415 5.415 5 C 0.362 3.638 6 O -0.459 6.459 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.734 3.266 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.192 1.192 15 C -0.096 4.096 16 N -0.212 5.212 17 C -0.095 4.095 18 O 0.015 5.985 19 N -0.083 5.083 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.217 0.783 24 H 0.080 0.920 25 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.183 -4.768 -11.232 12.203 hybrid contribution 0.619 -0.913 0.269 1.135 sum 0.436 -5.681 -10.963 12.355 Atomic orbital electron populations 1.22160 0.94482 1.01923 1.02581 1.18771 0.93475 0.96308 0.78310 0.87589 1.46284 1.73490 1.13118 1.08603 1.18244 0.77884 0.86405 0.81299 1.90605 1.54848 1.16225 1.84230 1.20818 1.46789 0.97222 0.93149 0.91391 1.25697 0.93313 0.94486 0.99697 1.70001 1.34850 1.08162 1.26466 0.86399 0.79906 0.79703 0.80551 1.19272 1.20504 1.19230 1.26434 0.98526 0.86925 0.97700 1.71888 1.15634 1.31332 1.02382 1.30457 0.97869 0.79698 1.01448 1.85302 1.56020 1.35555 1.21656 1.74611 1.16876 1.18131 0.98643 0.92793 0.92774 0.90216 0.78341 0.91951 0.72401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.47 37.16 0.35 -2.46 15 2 C 0.24 4.95 3.12 -69.08 -0.22 4.73 15 3 H 0.11 2.41 7.57 -51.93 -0.39 2.02 15 4 N -0.76 -17.84 5.06 -56.34 -0.29 -18.12 15 5 C 0.56 16.00 7.71 -12.99 -0.10 15.90 15 6 O -0.58 -18.51 14.68 5.20 0.08 -18.43 15 7 C -0.54 -15.52 9.54 -35.63 -0.34 -15.86 15 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 15 9 C 0.09 2.47 5.50 -17.37 -0.10 2.37 15 10 N -0.77 -22.95 11.83 55.55 0.66 -22.29 15 11 Si 0.91 20.26 29.56 -169.99 -5.02 15.24 15 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 15 C 0.18 3.17 7.01 -156.37 -1.10 2.07 15 16 N -0.48 -7.44 11.55 -13.72 -0.16 -7.59 15 17 C 0.15 1.53 13.40 51.98 0.70 2.23 15 18 O 0.07 0.95 11.31 18.11 0.20 1.15 15 19 N -0.38 -6.25 11.85 30.88 0.37 -5.88 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.08 1.64 8.14 -51.93 -0.42 1.22 15 23 H 0.38 8.44 8.33 -40.82 -0.34 8.10 15 24 H 0.27 7.33 8.29 -40.82 -0.34 6.99 15 25 H 0.26 0.96 8.06 -52.49 -0.42 0.54 15 LS Contribution 237.44 15.07 3.58 3.58 Total: -1.00 -35.27 237.44 -3.36 -38.63 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -1.97 Total: 4.74 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.80 Total: 8.99 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.58 Total: -53.89 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.28 Total: -17.28 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -35.27 -3.36 -38.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307387520.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.013 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds