Wall clock time and date at job start Sun Mar 29 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47523 * 2 1 4 4 N 1.46502 * 109.46874 * 120.00221 * 2 1 3 5 5 C 1.34775 * 119.99549 * 274.99565 * 4 2 1 6 6 O 1.21684 * 120.00343 * 359.97438 * 5 4 2 7 7 C 1.46380 * 119.99796 * 180.02562 * 5 4 2 8 8 H 1.08004 * 119.99704 * 0.02562 * 7 5 4 9 9 C 1.40040 * 120.00103 * 179.97438 * 7 5 4 10 10 N 1.30670 * 120.00158 * 0.02562 * 9 7 5 11 11 Si 1.86804 * 120.00136 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47071 * 60.00524 * 11 9 7 13 13 H 1.48498 * 109.47148 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47051 * 300.00569 * 11 9 7 15 15 C 1.50700 * 109.46772 * 239.99840 * 2 1 3 16 16 N 1.34495 * 126.29011 * 105.00359 * 15 2 1 17 17 C 1.31128 * 105.61627 * 179.73541 * 16 15 2 18 18 O 1.33639 * 106.89861 * 0.02562 * 17 16 15 19 19 N 1.21303 * 109.81253 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.46993 * 59.99583 * 1 2 3 21 21 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46685 * 300.00250 * 1 2 3 23 23 H 0.96999 * 120.00017 * 94.99188 * 4 2 1 24 24 H 0.96998 * 120.00566 * 179.97438 * 10 9 7 25 25 H 1.07995 * 126.54846 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1625 2.4116 7 6 2.6355 -0.7082 3.5522 8 1 2.8930 -1.7559 3.5034 9 6 2.7698 -0.0094 4.7583 10 7 2.4586 1.2583 4.8172 11 14 3.3937 -0.8897 6.2833 12 1 4.7551 -1.4234 6.0245 13 1 3.4435 0.0645 7.4200 14 1 2.4781 -2.0100 6.6176 15 6 2.0323 -0.7105 -1.2305 16 7 2.5622 -0.1322 -2.3230 17 6 2.8634 -1.1181 -3.1333 18 8 2.5111 -2.2498 -2.5160 19 7 2.0378 -1.9947 -1.4286 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.2489 -1.6319 1.1526 24 1 2.5513 1.7423 5.6527 25 1 3.3100 -1.0320 -4.1128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307387520.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:11 Heat of formation + Delta-G solvation = -0.619224 kcal Electronic energy + Delta-G solvation = -13566.567757 eV Core-core repulsion = 10968.447358 eV Total energy + Delta-G solvation = -2598.120399 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.66940 -39.78363 -37.36444 -35.65193 -34.58055 -33.04171 -31.37947 -28.27570 -26.07192 -25.08007 -23.09298 -21.35845 -19.80499 -19.11477 -18.57663 -17.52682 -17.09431 -16.15487 -15.90670 -15.20810 -15.02662 -14.42212 -13.80250 -13.55540 -13.44231 -12.94664 -12.76593 -12.69923 -12.65848 -12.44662 -12.08208 -12.06258 -11.15079 -10.94683 -9.95200 -9.70757 -8.33293 -6.91449 0.28848 1.18422 1.39318 1.42554 1.54635 2.18623 2.23988 2.41578 2.59349 2.84660 3.38666 3.55213 3.95280 4.19735 4.30008 4.61282 4.71743 4.83128 5.01339 5.16395 5.27904 5.79084 6.00737 6.17248 6.81973 7.22502 7.39170 8.39896 8.61467 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.055211 B = 0.007477 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.023572 B = 3744.156749 C = 3998.498315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.239 3.761 3 H 0.075 0.925 4 N -0.749 5.749 5 C 0.542 3.458 6 O -0.622 6.622 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.031 3.969 10 N -0.817 5.817 11 Si 1.000 3.000 12 H -0.255 1.255 13 H -0.271 1.271 14 H -0.254 1.254 15 C 0.155 3.845 16 N -0.517 5.517 17 C 0.186 3.814 18 O 0.089 5.911 19 N -0.390 5.390 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.393 0.607 24 H 0.277 0.723 25 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -7.601 -13.135 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.131 3.869 3 H 0.093 0.907 4 N -0.404 5.404 5 C 0.348 3.652 6 O -0.509 6.509 7 C -0.610 4.610 8 H 0.103 0.897 9 C -0.185 4.185 10 N -0.446 5.446 11 Si 0.819 3.181 12 H -0.179 1.179 13 H -0.196 1.196 14 H -0.178 1.178 15 C -0.118 4.118 16 N -0.250 5.250 17 C -0.053 4.053 18 O 0.026 5.974 19 N -0.096 5.096 20 H 0.099 0.901 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.226 0.774 24 H 0.087 0.913 25 H 0.341 0.659 Dipole moment (debyes) X Y Z Total from point charges 0.701 -6.696 -12.277 14.002 hybrid contribution 0.374 -0.345 0.371 0.630 sum 1.075 -7.041 -11.907 13.874 Atomic orbital electron populations 1.22015 0.93097 1.02444 1.02386 1.18629 0.94620 0.94885 0.78752 0.90694 1.45936 1.72640 1.13259 1.08565 1.18579 0.77678 0.86092 0.82900 1.90558 1.56855 1.18109 1.85376 1.21357 1.47392 0.98253 0.93974 0.89716 1.26958 0.92734 0.95170 1.03599 1.70159 1.36013 1.10441 1.28035 0.85042 0.79635 0.78388 0.75051 1.17948 1.19593 1.17835 1.25777 1.00788 0.87494 0.97707 1.71840 1.17312 1.33144 1.02686 1.31777 0.94254 0.77347 1.01906 1.85266 1.55393 1.36127 1.20607 1.74600 1.17308 1.17418 1.00228 0.90147 0.91758 0.93153 0.77396 0.91329 0.65877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.47 71.98 0.68 -4.62 15 2 C 0.24 10.16 3.12 44.25 0.14 10.30 15 3 H 0.08 3.63 7.57 -2.39 -0.02 3.61 15 4 N -0.75 -36.26 5.06 -450.39 -2.28 -38.54 15 5 C 0.54 32.37 7.71 86.36 0.67 33.03 15 6 O -0.62 -42.04 14.68 -4.30 -0.06 -42.11 15 7 C -0.57 -33.31 9.54 24.83 0.24 -33.07 15 8 H 0.08 4.46 7.85 -2.91 -0.02 4.44 15 9 C 0.03 1.75 5.50 85.30 0.47 2.22 15 10 N -0.82 -50.28 11.83 21.83 0.26 -50.02 15 11 Si 1.00 41.35 29.56 68.60 2.03 43.38 15 12 H -0.26 -9.98 7.11 99.48 0.71 -9.28 15 13 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 14 H -0.25 -9.92 7.11 99.48 0.71 -9.21 15 15 C 0.16 5.44 7.01 138.46 0.97 6.41 15 16 N -0.52 -15.11 11.55 -315.38 -3.64 -18.75 15 17 C 0.19 3.14 13.40 130.51 1.75 4.89 15 18 O 0.09 2.00 11.31 74.87 0.85 2.85 15 19 N -0.39 -12.33 11.85 -60.39 -0.72 -13.05 15 20 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.05 2.17 8.14 -2.39 -0.02 2.16 15 23 H 0.39 17.49 8.33 -92.71 -0.77 16.72 15 24 H 0.28 15.38 8.29 -92.71 -0.77 14.61 15 25 H 0.33 0.30 8.06 -2.91 -0.02 0.28 15 Total: -1.00 -80.79 237.44 1.80 -79.00 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.46 Total: 18.10 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 4.91 Total: 19.15 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -6.38 Total: -120.36 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: 0.78 Total: -39.26 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -80.79 1.80 -79.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307387520.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.377 kcal (2) G-P(sol) polarization free energy of solvation -80.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds