Wall clock time and date at job start Sun Mar 29 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32990 * 1 3 3 C 1.47095 * 120.00053 * 2 1 4 4 O 1.21611 * 120.00496 * 354.71685 * 3 2 1 5 5 N 1.34786 * 119.99834 * 174.72389 * 3 2 1 6 6 C 1.46962 * 120.59381 * 5.03669 * 5 3 2 7 7 C 1.53368 * 108.63176 * 235.24820 * 6 5 3 8 8 N 1.46965 * 108.63513 * 310.57534 * 7 6 5 9 9 C 1.36940 * 120.59510 * 235.20303 * 8 7 6 10 10 H 1.07995 * 120.00347 * 147.98098 * 9 8 7 11 11 C 1.38814 * 119.99894 * 327.71003 * 9 8 7 12 12 N 1.31622 * 120.00064 * 350.03853 * 11 9 8 13 13 Si 1.86794 * 120.00256 * 170.04244 * 11 9 8 14 14 H 1.48503 * 109.46778 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47391 * 119.99447 * 13 11 9 16 16 H 1.48498 * 109.47296 * 240.00225 * 13 11 9 17 17 C 1.46958 * 118.81303 * 55.48106 * 8 7 6 18 18 C 1.46965 * 120.59295 * 185.05741 * 5 3 2 19 19 H 1.08002 * 120.00140 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.00225 * 179.97438 * 1 2 3 21 21 H 1.08002 * 119.99599 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.60933 * 115.50444 * 6 5 3 23 23 H 1.08998 * 109.75168 * 355.07575 * 6 5 3 24 24 H 1.09006 * 109.60765 * 190.83036 * 7 6 5 25 25 H 1.09005 * 109.75338 * 70.40457 * 7 6 5 26 26 H 0.96994 * 120.00338 * 180.02562 * 12 11 9 27 27 H 1.08999 * 109.61033 * 64.26527 * 17 8 7 28 28 H 1.08995 * 109.61171 * 184.77943 * 17 8 7 29 29 H 1.08998 * 109.60851 * 244.49999 * 18 5 3 30 30 H 1.09003 * 109.61048 * 4.83403 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4613 2.3249 -0.0970 5 7 3.4090 1.2763 0.1073 6 6 4.1610 0.0137 0.1142 7 6 5.0255 -0.0348 1.3801 8 7 5.7646 1.2305 1.4928 9 6 7.1296 1.2330 1.6028 10 1 7.7035 2.0470 1.1853 11 6 7.7751 0.1920 2.2559 12 7 7.0765 -0.6917 2.9367 13 14 9.6352 0.0453 2.1687 14 1 10.1812 1.1550 1.3467 15 1 10.2024 0.1184 3.5391 16 1 10.0008 -1.2544 1.5503 17 6 5.0121 2.4928 1.4915 18 6 4.1480 2.5416 0.2200 19 1 -0.5400 0.9353 -0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 1.8698 -0.9354 -0.0004 22 1 4.8001 -0.0362 -0.7673 23 1 3.4682 -0.8277 0.1120 24 1 5.7291 -0.8645 1.3111 25 1 4.3897 -0.1662 2.2557 26 1 7.5276 -1.4189 3.3934 27 1 4.3730 2.5387 2.3733 28 1 5.7067 3.3328 1.4960 29 1 4.7861 2.6716 -0.6541 30 1 3.4445 3.3716 0.2860 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307400962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:46 Heat of formation + Delta-G solvation = 18.272432 kcal Electronic energy + Delta-G solvation = -14090.979465 eV Core-core repulsion = 11694.937275 eV Total energy + Delta-G solvation = -2396.042190 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.53785 -36.80370 -33.83687 -32.85510 -31.21334 -30.10425 -27.04063 -24.19747 -23.15802 -22.06207 -19.94139 -18.24100 -17.51326 -16.18616 -15.50071 -14.82485 -14.63780 -13.91708 -13.59439 -13.47171 -13.28178 -13.12106 -12.39715 -11.82700 -11.49281 -11.23010 -10.88926 -10.70617 -10.50328 -10.22595 -10.07848 -9.85957 -9.66338 -9.36714 -8.60965 -8.21246 -6.66435 -5.86820 -3.37730 1.61708 3.31610 3.39705 3.41575 3.50953 3.67883 4.41970 4.89710 5.10507 5.32045 5.38630 5.66443 5.81346 5.89559 5.93249 6.14207 6.20159 6.32481 6.42702 6.43391 6.50548 6.80273 6.95629 7.23706 7.48965 7.70637 7.95517 8.37667 8.59760 9.11819 9.71928 10.31100 11.20308 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.060418 B = 0.008203 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.323548 B = 3412.508936 C = 3704.814548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.204 4.204 3 C 0.536 3.464 4 O -0.566 6.566 5 N -0.591 5.591 6 C 0.077 3.923 7 C 0.157 3.843 8 N -0.592 5.592 9 C -0.255 4.255 10 H 0.067 0.933 11 C 0.005 3.995 12 N -0.905 5.905 13 Si 0.907 3.093 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.288 1.288 17 C 0.132 3.868 18 C 0.095 3.905 19 H 0.110 0.890 20 H 0.111 0.889 21 H 0.130 0.870 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.024 0.976 26 H 0.255 0.745 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 -0.872 -5.190 8.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.225 4.225 3 C 0.326 3.674 4 O -0.448 6.448 5 N -0.322 5.322 6 C -0.047 4.047 7 C 0.030 3.970 8 N -0.315 5.315 9 C -0.385 4.385 10 H 0.085 0.915 11 C -0.194 4.194 12 N -0.549 5.549 13 Si 0.737 3.263 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.215 1.215 17 C 0.004 3.996 18 C -0.029 4.029 19 H 0.129 0.871 20 H 0.129 0.871 21 H 0.147 0.853 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.458 -0.456 -5.136 9.067 hybrid contribution 1.059 -0.337 0.096 1.115 sum -6.399 -0.793 -5.040 8.184 Atomic orbital electron populations 1.24624 0.95359 1.02770 0.92109 1.22990 0.96299 0.97777 1.05389 1.18671 0.82205 0.89622 0.76902 1.90707 1.68204 1.33602 1.52303 1.47986 1.05377 1.08718 1.70110 1.22773 0.95270 0.84210 1.02421 1.21212 0.93613 0.91189 0.90952 1.43971 1.02820 0.99623 1.85093 1.19255 0.81477 1.08132 1.29596 0.91548 1.25226 0.98193 0.99394 0.96579 1.69952 1.34312 1.16403 1.34256 0.86149 0.85136 0.77649 0.77396 1.20173 1.21573 1.21496 1.21404 0.93851 0.90840 0.93457 1.22294 0.94999 0.85484 1.00152 0.87142 0.87108 0.85276 0.91821 0.90700 0.88050 0.95808 0.93488 0.95837 0.91475 0.91968 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 14.31 28.91 0.41 -0.90 16 2 C -0.20 -2.94 9.36 -37.81 -0.35 -3.29 16 3 C 0.54 9.93 7.63 -12.66 -0.10 9.84 16 4 O -0.57 -11.95 15.66 5.27 0.08 -11.87 16 5 N -0.59 -11.23 2.95 -173.61 -0.51 -11.74 16 6 C 0.08 1.41 6.50 -3.60 -0.02 1.39 16 7 C 0.16 3.58 5.45 -3.60 -0.02 3.56 16 8 N -0.59 -14.59 2.95 -171.77 -0.51 -15.10 16 9 C -0.25 -6.80 9.57 -15.06 -0.14 -6.94 16 10 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 11 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 12 N -0.91 -25.36 11.04 55.49 0.61 -24.74 16 13 Si 0.91 21.06 29.57 -169.99 -5.03 16.03 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.13 2.81 6.70 -3.37 -0.02 2.79 16 18 C 0.09 1.82 6.60 -3.37 -0.02 1.80 16 19 H 0.11 1.42 7.50 -52.49 -0.39 1.02 16 20 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 21 H 0.13 1.61 5.86 -52.49 -0.31 1.30 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.07 1.14 5.30 -51.93 -0.28 0.86 16 24 H 0.10 2.54 6.06 -51.93 -0.31 2.22 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.52 7.02 -51.93 -0.36 1.16 16 LS Contribution 251.12 15.07 3.78 3.78 Total: -1.00 -30.63 251.12 -5.65 -36.28 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.73 Total: -0.93 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.36 Total: 8.28 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.41 Total: -51.58 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.63 -5.65 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307400962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.553 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds