Wall clock time and date at job start Sun Mar 29 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32990 * 1 3 3 C 1.47095 * 120.00053 * 2 1 4 4 O 1.21611 * 120.00496 * 354.71685 * 3 2 1 5 5 N 1.34786 * 119.99834 * 174.72389 * 3 2 1 6 6 C 1.46962 * 120.59381 * 5.03669 * 5 3 2 7 7 C 1.53368 * 108.63176 * 235.24820 * 6 5 3 8 8 N 1.46965 * 108.63513 * 310.57534 * 7 6 5 9 9 C 1.36940 * 120.59510 * 235.20303 * 8 7 6 10 10 H 1.07995 * 120.00347 * 147.98098 * 9 8 7 11 11 C 1.38814 * 119.99894 * 327.71003 * 9 8 7 12 12 N 1.31622 * 120.00064 * 350.03853 * 11 9 8 13 13 Si 1.86794 * 120.00256 * 170.04244 * 11 9 8 14 14 H 1.48503 * 109.46778 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47391 * 119.99447 * 13 11 9 16 16 H 1.48498 * 109.47296 * 240.00225 * 13 11 9 17 17 C 1.46958 * 118.81303 * 55.48106 * 8 7 6 18 18 C 1.46965 * 120.59295 * 185.05741 * 5 3 2 19 19 H 1.08002 * 120.00140 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.00225 * 179.97438 * 1 2 3 21 21 H 1.08002 * 119.99599 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.60933 * 115.50444 * 6 5 3 23 23 H 1.08998 * 109.75168 * 355.07575 * 6 5 3 24 24 H 1.09006 * 109.60765 * 190.83036 * 7 6 5 25 25 H 1.09005 * 109.75338 * 70.40457 * 7 6 5 26 26 H 0.96994 * 120.00338 * 180.02562 * 12 11 9 27 27 H 1.08999 * 109.61033 * 64.26527 * 17 8 7 28 28 H 1.08995 * 109.61171 * 184.77943 * 17 8 7 29 29 H 1.08998 * 109.60851 * 244.49999 * 18 5 3 30 30 H 1.09003 * 109.61048 * 4.83403 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4613 2.3249 -0.0970 5 7 3.4090 1.2763 0.1073 6 6 4.1610 0.0137 0.1142 7 6 5.0255 -0.0348 1.3801 8 7 5.7646 1.2305 1.4928 9 6 7.1296 1.2330 1.6028 10 1 7.7035 2.0470 1.1853 11 6 7.7751 0.1920 2.2559 12 7 7.0765 -0.6917 2.9367 13 14 9.6352 0.0453 2.1687 14 1 10.1812 1.1550 1.3467 15 1 10.2024 0.1184 3.5391 16 1 10.0008 -1.2544 1.5503 17 6 5.0121 2.4928 1.4915 18 6 4.1480 2.5416 0.2200 19 1 -0.5400 0.9353 -0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 1.8698 -0.9354 -0.0004 22 1 4.8001 -0.0362 -0.7673 23 1 3.4682 -0.8277 0.1120 24 1 5.7291 -0.8645 1.3111 25 1 4.3897 -0.1662 2.2557 26 1 7.5276 -1.4189 3.3934 27 1 4.3730 2.5387 2.3733 28 1 5.7067 3.3328 1.4960 29 1 4.7861 2.6716 -0.6541 30 1 3.4445 3.3716 0.2860 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307400962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:46 Heat of formation + Delta-G solvation = -1.685015 kcal Electronic energy + Delta-G solvation = -14091.844885 eV Core-core repulsion = 11694.937275 eV Total energy + Delta-G solvation = -2396.907609 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.01454 -38.47408 -35.60048 -34.06800 -33.00586 -31.77556 -28.80285 -25.88830 -24.78281 -23.59825 -21.53054 -19.76127 -18.95319 -17.94129 -17.05361 -16.61107 -16.18302 -15.50846 -15.30329 -15.10363 -14.94352 -14.41735 -13.99221 -13.30904 -13.16852 -12.79507 -12.66354 -12.44100 -12.22521 -12.01903 -11.89754 -11.67360 -10.85284 -10.73405 -10.59546 -9.80455 -8.61041 -7.88481 -5.43748 0.50534 1.48103 1.50327 1.60425 2.08567 2.35109 2.50817 3.27327 3.58000 3.67900 4.11901 4.23709 4.27467 4.42756 4.58274 4.65058 4.74336 4.79985 4.83592 5.03866 5.21371 5.37199 5.43054 5.60008 5.62583 5.68550 6.38034 6.51251 7.11617 7.16799 7.76610 8.32223 9.16006 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.060418 B = 0.008203 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.323548 B = 3412.508936 C = 3704.814548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.234 4.234 3 C 0.530 3.470 4 O -0.600 6.600 5 N -0.600 5.600 6 C 0.093 3.907 7 C 0.163 3.837 8 N -0.610 5.610 9 C -0.267 4.267 10 H 0.067 0.933 11 C -0.044 4.044 12 N -0.934 5.934 13 Si 0.972 3.028 14 H -0.268 1.268 15 H -0.293 1.293 16 H -0.286 1.286 17 C 0.133 3.867 18 C 0.104 3.896 19 H 0.099 0.901 20 H 0.155 0.845 21 H 0.151 0.849 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.000 1.000 26 H 0.253 0.747 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -1.581 -6.181 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.254 4.254 3 C 0.323 3.677 4 O -0.484 6.484 5 N -0.330 5.330 6 C -0.030 4.030 7 C 0.036 3.964 8 N -0.334 5.334 9 C -0.397 4.397 10 H 0.085 0.915 11 C -0.240 4.240 12 N -0.579 5.579 13 Si 0.800 3.200 14 H -0.192 1.192 15 H -0.220 1.220 16 H -0.213 1.213 17 C 0.006 3.994 18 C -0.021 4.021 19 H 0.117 0.883 20 H 0.172 0.828 21 H 0.169 0.831 22 H 0.087 0.913 23 H 0.129 0.871 24 H 0.096 0.904 25 H 0.018 0.982 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.131 -1.158 -6.144 10.257 hybrid contribution 1.150 -0.075 0.435 1.231 sum -6.981 -1.233 -5.709 9.102 Atomic orbital electron populations 1.24987 0.94508 1.04313 0.87511 1.22973 0.97064 0.96342 1.09070 1.19412 0.81847 0.90883 0.75597 1.90683 1.68601 1.35237 1.53888 1.48076 1.05930 1.08532 1.70471 1.22580 0.95392 0.85310 0.99766 1.21051 0.93124 0.89882 0.92308 1.44244 1.02729 1.01037 1.85401 1.19546 0.82706 1.08142 1.29314 0.91493 1.25948 1.02246 0.99259 0.96521 1.70104 1.35778 1.16874 1.35171 0.85138 0.80164 0.77712 0.76977 1.19202 1.22041 1.21270 1.21445 0.93844 0.89967 0.94112 1.22097 0.94779 0.86203 0.98972 0.88280 0.82760 0.83132 0.91344 0.87069 0.90423 0.98220 0.93804 0.97326 0.90818 0.91236 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 14.31 66.65 0.95 -0.56 16 2 C -0.23 -6.07 9.36 23.43 0.22 -5.85 16 3 C 0.53 18.91 7.63 86.57 0.66 19.57 16 4 O -0.60 -24.85 15.66 -4.06 -0.06 -24.92 16 5 N -0.60 -22.14 2.95 -821.44 -2.42 -24.56 16 6 C 0.09 3.28 6.50 86.41 0.56 3.84 16 7 C 0.16 7.48 5.45 86.41 0.47 7.95 16 8 N -0.61 -30.32 2.95 -697.36 -2.06 -32.37 16 9 C -0.27 -14.30 9.57 84.03 0.80 -13.49 16 10 H 0.07 3.50 7.85 -2.91 -0.02 3.48 16 11 C -0.04 -2.37 5.06 84.86 0.43 -1.94 16 12 N -0.93 -53.05 11.04 21.65 0.24 -52.81 16 13 Si 0.97 43.34 29.57 68.60 2.03 45.37 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 16 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 17 C 0.13 5.72 6.70 86.57 0.58 6.30 16 18 C 0.10 3.93 6.60 86.56 0.57 4.50 16 19 H 0.10 2.28 7.50 -2.91 -0.02 2.25 16 20 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 21 H 0.15 3.18 5.86 -2.91 -0.02 3.16 16 22 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.11 3.09 5.30 -2.39 -0.01 3.07 16 24 H 0.08 3.94 6.06 -2.38 -0.01 3.93 16 25 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 26 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 3.00 7.93 -2.39 -0.02 2.99 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.08 3.12 7.02 -2.39 -0.02 3.10 16 Total: -1.00 -66.14 251.12 4.10 -62.04 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.12 Total: 6.94 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 5.25 Total: 20.31 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.24 Total: -109.74 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.06 Total: -24.92 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.14 4.10 -62.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307400962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.350 kcal (2) G-P(sol) polarization free energy of solvation -66.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds