Wall clock time and date at job start Sun Mar 29 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30754 * 126.03937 * 2 1 4 4 N 1.28409 * 111.18170 * 180.02562 * 3 2 1 5 5 H 0.97005 * 125.17457 * 180.26936 * 4 3 2 6 6 C 1.37205 * 109.64916 * 359.97438 * 4 3 2 7 7 C 1.46501 * 126.98086 * 180.02562 * 6 4 3 8 8 O 1.21727 * 120.00002 * 179.97438 * 7 6 4 9 9 N 1.34787 * 119.99698 * 359.97438 * 7 6 4 10 10 C 1.36892 * 119.99479 * 180.02562 * 9 7 6 11 11 H 1.07991 * 120.00007 * 359.97438 * 10 9 7 12 12 C 1.39012 * 119.99445 * 180.02562 * 10 9 7 13 13 N 1.31395 * 120.00118 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99609 * 180.02562 * 12 10 9 15 15 H 1.48489 * 109.47094 * 59.99579 * 14 12 10 16 16 H 1.48504 * 109.46866 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46759 * 299.99695 * 14 12 10 18 18 C 1.39112 * 106.03818 * 0.02562 * 6 4 3 19 19 O 1.35823 * 127.39446 * 180.02562 * 18 6 4 20 20 H 1.09004 * 109.46978 * 269.99618 * 1 2 3 21 21 H 1.09000 * 109.46902 * 29.99371 * 1 2 3 22 22 H 1.09007 * 109.47235 * 149.99547 * 1 2 3 23 23 H 0.97000 * 120.00154 * 0.02562 * 9 7 6 24 24 H 0.97001 * 119.99644 * 179.97438 * 13 12 10 25 25 H 0.96700 * 114.00253 * 90.00566 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2763 1.0573 0.0000 4 7 3.5174 0.7280 -0.0005 5 1 4.2609 1.3511 0.0031 6 6 3.6320 -0.6392 -0.0004 7 6 4.8718 -1.4197 -0.0003 8 8 4.8253 -2.6360 0.0003 9 7 6.0640 -0.7907 -0.0009 10 6 7.2225 -1.5200 -0.0014 11 1 7.1812 -2.5992 -0.0008 12 6 8.4520 -0.8714 -0.0015 13 7 8.5021 0.4416 -0.0017 14 14 10.0329 -1.8665 -0.0029 15 1 10.0783 -2.7219 -1.2158 16 1 11.1976 -0.9453 -0.0022 17 1 10.0794 -2.7234 1.2091 18 6 2.3318 -1.1339 -0.0003 19 8 1.9446 -2.4358 0.0004 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3634 -0.8900 -0.5139 23 1 6.1010 0.1785 -0.0011 24 1 9.3601 0.8941 -0.0014 25 1 1.8323 -2.8123 0.8840 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307522941.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:24 Heat of formation + Delta-G solvation = -40.605598 kcal Electronic energy + Delta-G solvation = -13534.407196 eV Core-core repulsion = 10934.552858 eV Total energy + Delta-G solvation = -2599.854338 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.50187 -39.96632 -38.19116 -36.15842 -33.99025 -33.24406 -31.06895 -28.69245 -27.28632 -24.15675 -21.95013 -21.19123 -20.47131 -19.37530 -18.41141 -17.16984 -16.77723 -16.63123 -15.88755 -15.30621 -15.09842 -14.97307 -14.31522 -13.66546 -13.61971 -13.25358 -12.99138 -12.84517 -12.56748 -12.15371 -11.66740 -11.17403 -10.76728 -10.26370 -10.12448 -9.76167 -8.62314 -6.08172 0.16700 1.38032 1.41058 1.44700 1.51920 1.73993 2.21702 2.24873 2.86236 3.14327 3.29182 3.77508 4.01257 4.12664 4.62549 4.89547 4.95793 4.99516 5.29576 5.45277 5.75970 5.98365 6.37555 6.83163 6.90471 6.94320 7.28520 7.81805 8.54336 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.064177 B = 0.007726 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.189684 B = 3623.138202 C = 4041.648974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.010 3.990 3 N -0.272 5.272 4 N -0.370 5.370 5 H 0.456 0.544 6 C -0.047 4.047 7 C 0.497 3.503 8 O -0.610 6.610 9 N -0.548 5.548 10 C -0.338 4.338 11 H 0.089 0.911 12 C -0.005 4.005 13 N -0.908 5.908 14 Si 1.000 3.000 15 H -0.270 1.270 16 H -0.267 1.267 17 H -0.268 1.268 18 C 0.033 3.967 19 O -0.463 6.463 20 H 0.093 0.907 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.395 0.605 24 H 0.284 0.716 25 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 2.656 1.773 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.150 4.150 3 N -0.107 5.107 4 N -0.089 5.089 5 H 0.304 0.696 6 C -0.176 4.176 7 C 0.284 3.716 8 O -0.496 6.496 9 N -0.183 5.183 10 C -0.468 4.468 11 H 0.107 0.893 12 C -0.207 4.207 13 N -0.548 5.548 14 Si 0.823 3.177 15 H -0.195 1.195 16 H -0.192 1.192 17 H -0.193 1.193 18 C -0.024 4.024 19 O -0.270 6.270 20 H 0.111 0.889 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.229 0.771 24 H 0.094 0.906 25 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.380 3.151 1.162 9.963 hybrid contribution 1.469 -0.500 0.462 1.619 sum -7.911 2.651 1.625 8.500 Atomic orbital electron populations 1.20202 0.83016 1.04304 1.04256 1.22927 0.99178 0.87217 1.05709 1.72947 0.89674 1.27301 1.20776 1.43290 1.06751 1.04638 1.54269 0.69620 1.22131 0.96549 0.85501 1.13467 1.16857 0.82242 0.87069 0.85441 1.90656 1.86617 1.14034 1.58261 1.41778 1.04530 1.09280 1.62673 1.19766 0.83667 0.92899 1.50442 0.89343 1.26181 1.02298 0.97033 0.95202 1.69619 1.28917 1.08309 1.47919 0.84878 0.75862 0.77746 0.79259 1.19490 1.19172 1.19303 1.18681 0.88543 0.86200 1.09016 1.84716 1.88120 1.19952 1.34235 0.88881 0.89648 0.89554 0.77116 0.90586 0.74289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.45 71.24 0.74 -0.47 15 2 C 0.01 0.30 7.23 43.20 0.31 0.61 15 3 N -0.27 -8.84 12.12 -47.21 -0.57 -9.41 15 4 N -0.37 -12.71 6.87 -47.71 -0.33 -13.04 15 5 H 0.46 13.63 8.23 -220.02 -1.81 11.82 15 6 C -0.05 -1.96 7.17 40.67 0.29 -1.67 15 7 C 0.50 25.11 7.73 86.39 0.67 25.78 15 8 O -0.61 -35.09 16.07 -1.14 -0.02 -35.11 15 9 N -0.55 -27.97 5.28 -310.77 -1.64 -29.61 15 10 C -0.34 -18.71 9.68 84.09 0.81 -17.90 15 11 H 0.09 5.18 7.15 -2.92 -0.02 5.15 15 12 C -0.01 -0.26 5.50 84.94 0.47 0.20 15 13 N -0.91 -46.50 13.05 21.68 0.28 -46.22 15 14 Si 1.00 40.91 29.55 68.60 2.03 42.94 15 15 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 16 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 17 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 18 C 0.03 1.24 7.37 22.96 0.17 1.41 15 19 O -0.46 -16.37 13.15 -88.27 -1.16 -17.53 15 20 H 0.09 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.09 1.63 8.14 -2.38 -0.02 1.61 15 23 H 0.39 18.59 7.07 -92.71 -0.66 17.94 15 24 H 0.28 13.55 8.31 -92.71 -0.77 12.78 15 25 H 0.40 10.49 9.06 -74.06 -0.67 9.82 15 Total: -1.00 -68.00 236.80 0.19 -67.81 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -1.87 Total: 32.21 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 3.47 Total: 7.96 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -2.26 Total: -98.28 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -1.18 Total: -52.64 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -68.00 0.19 -67.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307522941.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.201 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds