Wall clock time and date at job start Sun Mar 29 2020 21:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28725 * 125.86594 * 2 1 4 4 N 1.28633 * 110.16954 * 180.23970 * 3 2 1 5 5 C 1.33767 * 108.89186 * 359.76421 * 4 3 2 6 6 C 1.35310 * 125.86769 * 179.83395 * 2 1 3 7 7 C 1.50700 * 126.91351 * 0.02894 * 6 2 1 8 8 N 1.46504 * 109.47301 * 274.71327 * 7 6 2 9 9 C 1.34774 * 120.00071 * 179.97438 * 8 7 6 10 10 O 1.21688 * 119.99731 * 0.02562 * 9 8 7 11 11 C 1.46373 * 119.99943 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00054 * 353.93607 * 11 9 8 13 13 C 1.40047 * 119.99932 * 173.93942 * 11 9 8 14 14 N 1.30673 * 120.00184 * 6.15026 * 13 11 9 15 15 Si 1.86794 * 119.99944 * 186.14804 * 13 11 9 16 16 H 1.48500 * 109.47357 * 94.98604 * 15 13 11 17 17 H 1.48504 * 109.47274 * 214.98352 * 15 13 11 18 18 H 1.48505 * 109.47387 * 334.98056 * 15 13 11 19 19 H 1.08996 * 109.47082 * 270.17106 * 1 2 3 20 20 H 1.09006 * 109.47128 * 30.17114 * 1 2 3 21 21 H 1.08999 * 109.47422 * 150.16856 * 1 2 3 22 22 H 1.08004 * 126.75099 * 179.97438 * 5 4 3 23 23 H 1.08997 * 109.47078 * 154.71224 * 7 6 2 24 24 H 1.09000 * 109.46746 * 34.71312 * 7 6 2 25 25 H 0.97003 * 119.99603 * 0.02562 * 8 7 6 26 26 H 0.96997 * 120.00368 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0432 0.0000 4 7 3.4576 0.6952 -0.0051 5 6 3.5321 -0.6404 -0.0034 6 6 2.2578 -1.0965 0.0032 7 6 1.8117 -2.5360 0.0067 8 7 1.5582 -2.9653 1.3843 9 6 1.1460 -4.2242 1.6328 10 8 0.9849 -5.0043 0.7129 11 6 0.8921 -4.6529 3.0091 12 1 1.1278 -3.9944 3.8320 13 6 0.3437 -5.9171 3.2588 14 7 0.1702 -6.7599 2.2755 15 14 -0.1399 -6.3984 4.9977 16 1 -1.5842 -6.1220 5.2044 17 1 0.1210 -7.8461 5.2013 18 1 0.6592 -5.6101 5.9700 19 1 -0.3633 0.0031 1.0276 20 1 -0.3634 0.8885 -0.5165 21 1 -0.3634 -0.8915 -0.5112 22 1 4.4322 -1.2374 -0.0069 23 1 2.5919 -3.1592 -0.4303 24 1 0.8975 -2.6344 -0.5786 25 1 1.6862 -2.3432 2.1175 26 1 -0.2093 -7.6357 2.4484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307575035.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:42 Heat of formation + Delta-G solvation = 57.637869 kcal Electronic energy + Delta-G solvation = -13335.349171 eV Core-core repulsion = 10837.473652 eV Total energy + Delta-G solvation = -2497.875520 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.11971 -37.45416 -34.68058 -33.76255 -32.48078 -30.73875 -27.93673 -27.01989 -25.03228 -22.40701 -20.78145 -19.82531 -17.68446 -16.85707 -16.48190 -15.43596 -14.70726 -14.58951 -14.11314 -13.49066 -13.25055 -13.17766 -12.82596 -12.32920 -11.71301 -11.42962 -11.25279 -11.03989 -10.70901 -10.56621 -10.30658 -9.97975 -9.15625 -8.94570 -7.75135 -7.74336 -6.30343 -4.75199 1.65648 2.47128 2.69307 3.07836 3.15996 3.19411 4.03329 4.44817 4.49135 4.64472 4.84404 5.01236 5.08139 5.24677 5.33007 5.63680 5.76081 6.05828 6.21630 6.32731 6.66881 7.34240 7.72610 7.88295 8.20291 8.61439 8.92214 9.34248 10.46100 10.64083 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.055146 B = 0.006962 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.624856 B = 4020.904648 C = 4096.654645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.285 5.285 3 N -0.095 5.095 4 N -0.276 5.276 5 C -0.041 4.041 6 C -0.017 4.017 7 C 0.204 3.796 8 N -0.764 5.764 9 C 0.555 3.445 10 O -0.579 6.579 11 C -0.544 4.544 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.264 1.264 19 H 0.093 0.907 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.190 0.810 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.382 0.618 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 8.773 -1.794 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.080 5.080 3 N -0.075 5.075 4 N -0.141 5.141 5 C -0.199 4.199 6 C -0.149 4.149 7 C 0.077 3.923 8 N -0.422 5.422 9 C 0.360 3.640 10 O -0.461 6.461 11 C -0.581 4.581 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.394 5.394 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.188 1.188 19 H 0.112 0.888 20 H 0.117 0.883 21 H 0.120 0.880 22 H 0.207 0.793 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.213 0.787 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.588 9.557 -2.567 9.913 hybrid contribution -0.364 -1.088 1.205 1.664 sum -0.953 8.469 -1.362 8.631 Atomic orbital electron populations 1.22289 0.72734 1.05693 1.05402 1.47213 1.09404 1.04597 1.46745 1.78240 0.96706 1.11945 1.20588 1.75039 1.09621 1.12634 1.16840 1.23413 0.97340 0.91720 1.07473 1.22603 0.91334 0.92266 1.08745 1.19290 1.00654 0.83917 0.88448 1.46292 1.76023 1.15343 1.04509 1.18262 0.76532 0.78602 0.90628 1.90615 1.56426 1.52333 1.46766 1.20859 1.44919 1.01384 0.90956 0.91313 1.25699 0.93641 0.95673 0.98167 1.70013 1.31710 1.05559 1.32147 0.86340 0.79327 0.78258 0.82756 1.19778 1.20358 1.18838 0.88802 0.88299 0.88008 0.79294 0.90127 0.91934 0.78654 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 11.21 59.85 0.67 1.49 15 2 N -0.29 -4.11 3.74 -63.79 -0.24 -4.35 15 3 N -0.10 -1.55 13.17 60.35 0.79 -0.76 15 4 N -0.28 -4.68 12.41 30.23 0.38 -4.30 15 5 C -0.04 -0.63 11.99 -17.74 -0.21 -0.84 15 6 C -0.02 -0.26 6.36 -82.09 -0.52 -0.78 15 7 C 0.20 3.55 5.90 -5.19 -0.03 3.52 15 8 N -0.76 -15.84 5.54 -62.90 -0.35 -16.18 15 9 C 0.56 14.88 7.74 -12.99 -0.10 14.78 15 10 O -0.58 -17.73 15.05 5.20 0.08 -17.65 15 11 C -0.54 -14.72 9.53 -35.63 -0.34 -15.06 15 12 H 0.07 1.72 7.85 -52.49 -0.41 1.30 15 13 C 0.09 2.37 5.49 -17.37 -0.10 2.28 15 14 N -0.77 -22.12 11.85 55.55 0.66 -21.46 15 15 Si 0.91 19.44 29.56 -169.99 -5.03 14.42 15 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 19 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.10 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.10 0.99 7.22 -51.93 -0.37 0.61 15 22 H 0.19 2.39 8.06 -52.48 -0.42 1.97 15 23 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.06 1.09 7.31 -51.93 -0.38 0.71 15 25 H 0.38 7.26 8.44 -40.82 -0.34 6.91 15 26 H 0.27 7.05 8.29 -40.82 -0.34 6.72 15 LS Contribution 242.48 15.07 3.65 3.65 Total: -1.00 -34.00 242.48 -3.02 -37.02 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -2.34 Total: 4.23 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.63 Total: 5.39 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.24 Total: -47.06 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.08 Total: -17.65 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.00 -3.02 -37.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307575035.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.655 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds