Wall clock time and date at job start Sun Mar 29 2020 21:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28725 * 125.86594 * 2 1 4 4 N 1.28633 * 110.16954 * 180.23970 * 3 2 1 5 5 C 1.33767 * 108.89186 * 359.76421 * 4 3 2 6 6 C 1.35310 * 125.86769 * 179.83395 * 2 1 3 7 7 C 1.50700 * 126.91351 * 0.02894 * 6 2 1 8 8 N 1.46504 * 109.47301 * 274.71327 * 7 6 2 9 9 C 1.34774 * 120.00071 * 179.97438 * 8 7 6 10 10 O 1.21688 * 119.99731 * 0.02562 * 9 8 7 11 11 C 1.46373 * 119.99943 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00054 * 353.93607 * 11 9 8 13 13 C 1.40047 * 119.99932 * 173.93942 * 11 9 8 14 14 N 1.30673 * 120.00184 * 6.15026 * 13 11 9 15 15 Si 1.86794 * 119.99944 * 186.14804 * 13 11 9 16 16 H 1.48500 * 109.47357 * 94.98604 * 15 13 11 17 17 H 1.48504 * 109.47274 * 214.98352 * 15 13 11 18 18 H 1.48505 * 109.47387 * 334.98056 * 15 13 11 19 19 H 1.08996 * 109.47082 * 270.17106 * 1 2 3 20 20 H 1.09006 * 109.47128 * 30.17114 * 1 2 3 21 21 H 1.08999 * 109.47422 * 150.16856 * 1 2 3 22 22 H 1.08004 * 126.75099 * 179.97438 * 5 4 3 23 23 H 1.08997 * 109.47078 * 154.71224 * 7 6 2 24 24 H 1.09000 * 109.46746 * 34.71312 * 7 6 2 25 25 H 0.97003 * 119.99603 * 0.02562 * 8 7 6 26 26 H 0.96997 * 120.00368 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0432 0.0000 4 7 3.4576 0.6952 -0.0051 5 6 3.5321 -0.6404 -0.0034 6 6 2.2578 -1.0965 0.0032 7 6 1.8117 -2.5360 0.0067 8 7 1.5582 -2.9653 1.3843 9 6 1.1460 -4.2242 1.6328 10 8 0.9849 -5.0043 0.7129 11 6 0.8921 -4.6529 3.0091 12 1 1.1278 -3.9944 3.8320 13 6 0.3437 -5.9171 3.2588 14 7 0.1702 -6.7599 2.2755 15 14 -0.1399 -6.3984 4.9977 16 1 -1.5842 -6.1220 5.2044 17 1 0.1210 -7.8461 5.2013 18 1 0.6592 -5.6101 5.9700 19 1 -0.3633 0.0031 1.0276 20 1 -0.3634 0.8885 -0.5165 21 1 -0.3634 -0.8915 -0.5112 22 1 4.4322 -1.2374 -0.0069 23 1 2.5919 -3.1592 -0.4303 24 1 0.8975 -2.6344 -0.5786 25 1 1.6862 -2.3432 2.1175 26 1 -0.2093 -7.6357 2.4484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307575035.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:42 Heat of formation + Delta-G solvation = 30.792131 kcal Electronic energy + Delta-G solvation = -13336.513290 eV Core-core repulsion = 10837.473652 eV Total energy + Delta-G solvation = -2499.039638 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.33238 -39.40677 -36.02663 -35.28742 -34.50127 -32.25101 -29.11359 -28.68739 -26.68477 -23.60832 -22.19200 -21.59569 -19.43440 -18.15467 -17.72761 -17.38189 -16.28656 -15.94222 -15.88540 -15.01370 -14.66030 -14.21883 -14.14561 -13.79961 -13.38078 -13.13330 -12.78911 -12.67099 -12.57463 -12.02066 -11.96862 -11.11968 -10.92753 -10.47184 -9.82194 -9.57861 -8.30501 -6.85360 0.42775 1.40456 1.42109 1.42920 1.46136 1.58666 2.25775 2.46465 3.11154 3.33630 3.56290 3.63795 3.90627 4.08076 4.22651 4.51513 4.58080 4.67311 4.87190 5.14515 5.33332 5.53079 5.84933 6.08555 6.23164 6.87587 7.38876 7.45557 8.45381 8.65223 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.055146 B = 0.006962 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.624856 B = 4020.904648 C = 4096.654645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.275 5.275 3 N -0.104 5.104 4 N -0.301 5.301 5 C -0.036 4.036 6 C -0.023 4.023 7 C 0.213 3.787 8 N -0.750 5.750 9 C 0.544 3.456 10 O -0.626 6.626 11 C -0.572 4.572 12 H 0.085 0.915 13 C 0.034 3.966 14 N -0.818 5.818 15 Si 0.994 3.006 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.252 1.252 19 H 0.104 0.896 20 H 0.125 0.875 21 H 0.107 0.893 22 H 0.211 0.789 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.393 0.607 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 9.509 -0.552 9.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.071 5.071 3 N -0.084 5.084 4 N -0.165 5.165 5 C -0.195 4.195 6 C -0.156 4.156 7 C 0.087 3.913 8 N -0.406 5.406 9 C 0.349 3.651 10 O -0.513 6.513 11 C -0.609 4.609 12 H 0.103 0.897 13 C -0.182 4.182 14 N -0.447 5.447 15 Si 0.814 3.186 16 H -0.188 1.188 17 H -0.199 1.199 18 H -0.175 1.175 19 H 0.123 0.877 20 H 0.143 0.857 21 H 0.125 0.875 22 H 0.228 0.772 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.927 10.368 -1.324 10.493 hybrid contribution -0.255 -1.242 0.757 1.476 sum -1.182 9.126 -0.567 9.220 Atomic orbital electron populations 1.22675 0.70504 1.07325 1.06610 1.47511 1.10662 1.03800 1.45077 1.78194 0.96887 1.12425 1.20865 1.75036 1.10085 1.13367 1.18032 1.23832 0.98161 0.91433 1.06094 1.22237 0.91643 0.91444 1.10279 1.19185 1.00650 0.85120 0.86370 1.45872 1.74478 1.13798 1.06405 1.18493 0.76349 0.79849 0.90428 1.90577 1.58500 1.54245 1.47938 1.21383 1.45394 1.02362 0.91728 0.89696 1.26867 0.92863 0.95279 1.03186 1.70158 1.32924 1.06352 1.35272 0.85058 0.79285 0.77972 0.76325 1.18763 1.19872 1.17485 0.87744 0.85693 0.87488 0.77196 0.90515 0.91823 0.77423 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 11.21 127.77 1.43 2.69 15 2 N -0.28 -7.44 3.74 -355.73 -1.33 -8.77 15 3 N -0.10 -3.23 13.17 37.02 0.49 -2.74 15 4 N -0.30 -9.77 12.41 -58.26 -0.72 -10.49 15 5 C -0.04 -1.06 11.99 83.73 1.00 -0.05 15 6 C -0.02 -0.67 6.36 41.36 0.26 -0.41 15 7 C 0.21 7.26 5.90 85.63 0.51 7.76 15 8 N -0.75 -30.55 5.54 -471.14 -2.61 -33.16 15 9 C 0.54 29.32 7.74 86.36 0.67 29.99 15 10 O -0.63 -39.11 15.05 -4.31 -0.06 -39.18 15 11 C -0.57 -30.72 9.53 24.83 0.24 -30.48 15 12 H 0.08 4.13 7.85 -2.91 -0.02 4.10 15 13 C 0.03 1.80 5.49 85.30 0.47 2.27 15 14 N -0.82 -47.83 11.85 21.84 0.26 -47.57 15 15 Si 0.99 39.18 29.56 68.60 2.03 41.21 15 16 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 17 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 18 H -0.25 -9.29 7.11 99.48 0.71 -8.59 15 19 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.12 1.65 8.14 -2.38 -0.02 1.63 15 21 H 0.11 1.89 7.22 -2.39 -0.02 1.87 15 22 H 0.21 4.93 8.06 -2.91 -0.02 4.91 15 23 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.06 2.18 7.31 -2.39 -0.02 2.16 15 25 H 0.39 14.40 8.44 -92.71 -0.78 13.62 15 26 H 0.28 14.59 8.29 -92.71 -0.77 13.82 15 Total: -1.00 -73.00 242.48 3.05 -69.95 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.43 Total: 18.98 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.58 Total: 11.77 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -3.92 Total: -102.73 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.06 Total: -39.18 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -73.00 3.05 -69.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307575035.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.741 kcal (2) G-P(sol) polarization free energy of solvation -73.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds