Wall clock time and date at job start Sun Mar 29 2020 21:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47060 * 299.99704 * 3 2 1 6 6 H 1.48507 * 109.47075 * 59.99416 * 3 2 1 7 7 C 1.38810 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00361 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.46982 * 127.03289 * 0.02717 * 9 7 2 11 11 C 1.50767 * 106.56667 * 179.97438 * 10 9 7 12 12 O 1.21279 * 125.43002 * 180.02562 * 11 10 9 13 13 N 1.34299 * 109.14876 * 0.02562 * 11 10 9 14 14 C 1.46500 * 124.85446 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47471 * 269.97394 * 14 13 11 16 16 C 1.52999 * 117.50103 * 243.62261 * 15 14 13 17 17 C 1.53002 * 60.00151 * 252.50928 * 16 15 14 18 18 C 1.46222 * 110.29507 * 359.97438 * 13 11 10 19 19 H 0.96992 * 120.00405 * 0.02562 * 1 2 3 20 20 H 1.09003 * 110.03547 * 299.25449 * 10 9 7 21 21 H 1.08999 * 110.03921 * 60.64843 * 10 9 7 22 22 H 1.09001 * 109.47426 * 29.97783 * 14 13 11 23 23 H 1.09005 * 109.46986 * 149.97691 * 14 13 11 24 24 H 1.09001 * 115.54728 * 29.32933 * 15 14 13 25 25 H 1.08998 * 117.50096 * 0.02562 * 16 15 14 26 26 H 1.09001 * 117.49901 * 145.02292 * 16 15 14 27 27 H 1.08999 * 117.49860 * 252.51290 * 17 16 15 28 28 H 1.08993 * 117.49643 * 107.48661 * 17 16 15 29 29 H 1.08998 * 109.75504 * 240.34802 * 18 13 11 30 30 H 1.09001 * 109.75764 * 119.65128 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1332 -2.5680 -0.0005 11 6 -0.3829 -4.0549 -0.0007 12 8 -1.4739 -4.5846 -0.0019 13 7 0.7953 -4.6995 0.0007 14 6 0.9529 -6.1560 0.0005 15 6 1.0064 -6.6634 1.4429 16 6 2.3011 -7.3321 1.9090 17 6 1.0509 -8.1776 1.6579 18 6 1.8985 -3.7397 0.0014 19 1 -0.4850 0.8399 -0.0004 20 1 -0.5658 -2.1167 0.8924 21 1 -0.5646 -2.1160 -0.8936 22 1 0.1077 -6.6128 -0.5143 23 1 1.8773 -6.4213 -0.5125 24 1 0.4567 -6.0676 2.1715 25 1 3.1150 -7.4102 1.1882 26 1 2.6036 -7.1762 2.9446 27 1 0.5309 -8.5779 2.5282 28 1 1.0422 -8.8122 0.7718 29 1 2.5104 -3.8812 -0.8895 30 1 2.5087 -3.8803 0.8935 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307616888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:25 Heat of formation + Delta-G solvation = 28.333306 kcal Electronic energy + Delta-G solvation = -13878.200311 eV Core-core repulsion = 11482.594394 eV Total energy + Delta-G solvation = -2395.605917 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.64491 -37.24546 -35.93362 -33.54912 -31.05447 -27.98529 -26.63260 -24.82397 -22.38284 -21.45590 -20.85726 -19.01948 -17.36446 -16.01610 -15.56423 -15.07983 -14.72856 -14.32912 -14.02903 -13.26749 -13.01538 -12.68607 -12.46542 -11.93575 -11.56009 -11.51866 -11.27175 -11.10736 -10.86113 -10.45406 -10.22757 -9.99582 -9.88499 -9.00672 -8.94062 -8.27160 -7.05400 -5.90418 -3.28501 3.29411 3.33685 3.36811 3.41551 3.48121 3.87537 4.34437 4.78445 4.91972 5.02929 5.22586 5.33716 5.34849 5.52661 5.60771 5.73491 5.84087 5.88029 6.08570 6.10264 6.28304 6.34734 6.88711 7.10082 7.12220 7.54826 7.66947 8.03595 8.82076 9.01166 9.58770 10.20920 11.23554 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.051884 B = 0.007876 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.538331 B = 3554.346701 C = 3934.082939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.002 4.002 3 Si 0.922 3.078 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.606 5.606 10 C 0.144 3.856 11 C 0.503 3.497 12 O -0.550 6.550 13 N -0.630 5.630 14 C 0.165 3.835 15 C -0.166 4.166 16 C -0.179 4.179 17 C -0.177 4.177 18 C 0.361 3.639 19 H 0.258 0.742 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.033 0.967 30 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -10.994 1.396 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.752 3.248 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.359 4.359 8 H 0.106 0.894 9 N -0.336 5.336 10 C 0.016 3.984 11 C 0.293 3.707 12 O -0.429 6.429 13 N -0.365 5.365 14 C 0.042 3.958 15 C -0.185 4.185 16 C -0.216 4.216 17 C -0.215 4.215 18 C 0.150 3.850 19 H 0.069 0.931 20 H 0.102 0.898 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.095 0.905 24 H 0.124 0.876 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.099 -11.091 1.383 11.905 hybrid contribution 0.477 0.836 0.104 0.968 sum 4.576 -10.254 1.486 11.327 Atomic orbital electron populations 1.69892 1.05086 1.25853 1.55719 1.24888 0.95821 0.98055 1.01192 0.85901 0.78641 0.82897 0.77386 1.20246 1.21483 1.21496 1.18955 0.90516 0.80732 1.45692 0.89369 1.44197 1.01252 0.99820 1.88316 1.21111 0.86490 0.86589 1.04166 1.22068 0.83315 0.91902 0.73378 1.90620 1.25936 1.74439 1.51858 1.48479 1.08649 1.05587 1.73782 1.20742 1.02238 0.79008 0.93798 1.22832 1.01535 0.95112 0.99045 1.23031 0.91643 1.04537 1.02344 1.22912 1.01941 0.93358 1.03244 1.20723 0.85441 0.80477 0.98363 0.93146 0.89803 0.89779 0.89916 0.90550 0.87604 0.88724 0.88994 0.88914 0.88767 0.94925 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.54 55.49 0.58 -25.69 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 3 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.14 10.35 -15.06 -0.16 -6.29 16 8 H 0.09 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.61 -15.15 3.43 -177.79 -0.61 -15.76 16 10 C 0.14 3.62 5.47 -4.90 -0.03 3.59 16 11 C 0.50 11.49 8.13 -11.17 -0.09 11.40 16 12 O -0.55 -13.56 17.67 5.56 0.10 -13.46 16 13 N -0.63 -12.16 2.93 -177.58 -0.52 -12.68 16 14 C 0.16 2.48 6.27 -4.04 -0.03 2.45 16 15 C -0.17 -2.29 6.01 -90.62 -0.54 -2.84 16 16 C -0.18 -1.99 10.18 -26.73 -0.27 -2.27 16 17 C -0.18 -1.93 10.25 -26.73 -0.27 -2.20 16 18 C 0.36 7.30 7.89 -63.72 -0.50 6.80 16 19 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 20 H 0.08 2.29 7.54 -51.93 -0.39 1.90 16 21 H 0.08 2.29 7.54 -51.93 -0.39 1.90 16 22 H 0.08 1.27 7.98 -51.93 -0.41 0.85 16 23 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 24 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 25 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 259.44 15.07 3.91 3.91 Total: -1.00 -30.05 259.44 -7.65 -37.70 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.11 Total: -0.64 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.99 Total: 10.49 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.55 Total: -54.13 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.10 Total: -13.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.05 -7.65 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307616888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.034 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds