Wall clock time and date at job start Sun Mar 29 2020 21:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47442 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47060 * 299.99704 * 3 2 1 6 6 H 1.48507 * 109.47075 * 59.99416 * 3 2 1 7 7 C 1.38810 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00361 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.46982 * 127.03289 * 0.02717 * 9 7 2 11 11 C 1.50767 * 106.56667 * 179.97438 * 10 9 7 12 12 O 1.21279 * 125.43002 * 180.02562 * 11 10 9 13 13 N 1.34299 * 109.14876 * 0.02562 * 11 10 9 14 14 C 1.46500 * 124.85446 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47471 * 269.97394 * 14 13 11 16 16 C 1.52999 * 117.50103 * 243.62261 * 15 14 13 17 17 C 1.53002 * 60.00151 * 252.50928 * 16 15 14 18 18 C 1.46222 * 110.29507 * 359.97438 * 13 11 10 19 19 H 0.96992 * 120.00405 * 0.02562 * 1 2 3 20 20 H 1.09003 * 110.03547 * 299.25449 * 10 9 7 21 21 H 1.08999 * 110.03921 * 60.64843 * 10 9 7 22 22 H 1.09001 * 109.47426 * 29.97783 * 14 13 11 23 23 H 1.09005 * 109.46986 * 149.97691 * 14 13 11 24 24 H 1.09001 * 115.54728 * 29.32933 * 15 14 13 25 25 H 1.08998 * 117.50096 * 0.02562 * 16 15 14 26 26 H 1.09001 * 117.49901 * 145.02292 * 16 15 14 27 27 H 1.08999 * 117.49860 * 252.51290 * 17 16 15 28 28 H 1.08993 * 117.49643 * 107.48661 * 17 16 15 29 29 H 1.08998 * 109.75504 * 240.34802 * 18 13 11 30 30 H 1.09001 * 109.75764 * 119.65128 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1332 -2.5680 -0.0005 11 6 -0.3829 -4.0549 -0.0007 12 8 -1.4739 -4.5846 -0.0019 13 7 0.7953 -4.6995 0.0007 14 6 0.9529 -6.1560 0.0005 15 6 1.0064 -6.6634 1.4429 16 6 2.3011 -7.3321 1.9090 17 6 1.0509 -8.1776 1.6579 18 6 1.8985 -3.7397 0.0014 19 1 -0.4850 0.8399 -0.0004 20 1 -0.5658 -2.1167 0.8924 21 1 -0.5646 -2.1160 -0.8936 22 1 0.1077 -6.6128 -0.5143 23 1 1.8773 -6.4213 -0.5125 24 1 0.4567 -6.0676 2.1715 25 1 3.1150 -7.4102 1.1882 26 1 2.6036 -7.1762 2.9446 27 1 0.5309 -8.5779 2.5282 28 1 1.0422 -8.8122 0.7718 29 1 2.5104 -3.8812 -0.8895 30 1 2.5087 -3.8803 0.8935 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307616888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:25 Heat of formation + Delta-G solvation = 10.049197 kcal Electronic energy + Delta-G solvation = -13878.993170 eV Core-core repulsion = 11482.594394 eV Total energy + Delta-G solvation = -2396.398776 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.37232 -38.35185 -37.78141 -35.31767 -32.90889 -29.80954 -28.22950 -26.62031 -23.40933 -23.15886 -22.07238 -20.64474 -19.26830 -17.55520 -17.19852 -16.76797 -16.47099 -15.84491 -15.21466 -14.98135 -14.88589 -14.46503 -13.73679 -13.59173 -13.43725 -13.01175 -12.74567 -12.59036 -12.32354 -12.12472 -11.89713 -11.43630 -10.94164 -10.87668 -10.83909 -9.93779 -9.01665 -7.94961 -5.36394 1.46135 1.51878 1.53419 1.64015 1.94962 2.45130 2.91696 3.29492 3.30783 3.69372 3.79643 3.99337 4.07417 4.25119 4.45850 4.57438 4.62396 4.78844 4.81879 5.02578 5.02728 5.04074 5.19602 5.28730 5.48107 5.56932 5.74045 6.13190 6.90858 7.08546 7.59220 8.21526 9.19112 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.051884 B = 0.007876 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.538331 B = 3554.346701 C = 3934.082939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.062 4.062 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.107 0.893 9 N -0.625 5.625 10 C 0.155 3.845 11 C 0.506 3.494 12 O -0.574 6.574 13 N -0.615 5.615 14 C 0.162 3.838 15 C -0.196 4.196 16 C -0.163 4.163 17 C -0.160 4.160 18 C 0.360 3.640 19 H 0.253 0.747 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.078 0.922 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 -12.497 1.312 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.256 4.256 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.367 4.367 8 H 0.125 0.875 9 N -0.355 5.355 10 C 0.026 3.974 11 C 0.295 3.705 12 O -0.454 6.454 13 N -0.348 5.348 14 C 0.041 3.959 15 C -0.215 4.215 16 C -0.200 4.200 17 C -0.198 4.198 18 C 0.150 3.850 19 H 0.062 0.938 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.130 0.870 24 H 0.093 0.907 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.627 -12.653 1.302 14.342 hybrid contribution -0.252 1.216 0.150 1.250 sum 6.375 -11.437 1.452 13.174 Atomic orbital electron populations 1.70110 1.06834 1.26166 1.57351 1.25825 0.96599 1.01670 1.01477 0.84816 0.78450 0.78280 0.76521 1.17951 1.22001 1.22099 1.19462 0.91480 0.81362 1.44360 0.87540 1.44430 1.01144 1.01578 1.88305 1.20704 0.87021 0.88362 1.01300 1.21497 0.84053 0.91055 0.73932 1.90596 1.26957 1.74502 1.53377 1.48490 1.06937 1.07469 1.71947 1.21093 1.03846 0.75750 0.95186 1.22621 1.04328 0.97111 0.97487 1.23146 0.91293 1.02575 1.02993 1.23038 1.01258 0.91282 1.04178 1.20953 0.85546 0.78336 1.00135 0.93824 0.93136 0.92917 0.90326 0.86968 0.90744 0.86861 0.88625 0.88327 0.86915 0.92327 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.57 10.54 21.65 0.23 -56.34 16 2 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 3 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.24 -12.52 10.35 84.03 0.87 -11.65 16 8 H 0.11 5.06 7.83 -2.91 -0.02 5.04 16 9 N -0.63 -31.17 3.43 -716.39 -2.46 -33.63 16 10 C 0.15 8.09 5.47 85.56 0.47 8.56 16 11 C 0.51 23.48 8.13 87.75 0.71 24.19 16 12 O -0.57 -28.90 17.67 -3.03 -0.05 -28.96 16 13 N -0.62 -22.94 2.93 -834.39 -2.44 -25.39 16 14 C 0.16 4.46 6.27 86.38 0.54 5.00 16 15 C -0.20 -5.01 6.01 -10.79 -0.06 -5.08 16 16 C -0.16 -3.05 10.18 30.59 0.31 -2.74 16 17 C -0.16 -2.97 10.25 30.60 0.31 -2.65 16 18 C 0.36 13.81 7.89 170.95 1.35 15.16 16 19 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 20 H 0.05 2.94 7.54 -2.39 -0.02 2.93 16 21 H 0.05 3.05 7.54 -2.39 -0.02 3.03 16 22 H 0.08 2.25 7.98 -2.39 -0.02 2.23 16 23 H 0.11 2.30 7.88 -2.38 -0.02 2.29 16 24 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.11 1.73 8.03 -2.39 -0.02 1.71 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -66.13 259.44 3.39 -62.74 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.12 Total: 8.25 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 4.97 Total: 27.85 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -4.67 Total: -115.36 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -66.13 3.39 -62.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307616888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.794 kcal (2) G-P(sol) polarization free energy of solvation -66.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds