Wall clock time and date at job start Sun Mar 29 2020 21:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48500 * 109.47301 * 270.00476 * 3 2 1 5 5 H 1.48498 * 109.46924 * 30.00795 * 3 2 1 6 6 H 1.48507 * 109.47110 * 150.00116 * 3 2 1 7 7 C 1.37882 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46966 * 179.97438 * 9 7 2 11 11 N 1.46492 * 109.47158 * 180.02562 * 10 9 7 12 12 C 1.38996 * 120.00451 * 180.02562 * 11 10 9 13 13 C 1.39069 * 119.68504 * 359.97438 * 12 11 10 14 14 C 1.38380 * 119.15738 * 180.02562 * 13 12 11 15 15 C 1.38757 * 118.53396 * 0.25426 * 14 13 12 16 16 C 1.38374 * 119.30150 * 359.49627 * 15 14 13 17 17 F 1.35104 * 119.59974 * 180.25365 * 16 15 14 18 18 N 1.32135 * 120.79629 * 0.51781 * 16 15 14 19 19 H 0.96998 * 119.99506 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46530 * 60.00311 * 9 7 2 21 21 H 1.08995 * 109.46870 * 300.00136 * 9 7 2 22 22 H 1.09001 * 109.47016 * 59.99919 * 10 9 7 23 23 H 1.08996 * 109.47234 * 300.00253 * 10 9 7 24 24 H 0.97003 * 120.00140 * 0.02562 * 11 10 9 25 25 H 1.08000 * 120.42646 * 0.04480 * 13 12 11 26 26 H 1.08002 * 120.73050 * 179.97438 * 14 13 12 27 27 H 1.07994 * 120.34994 * 179.75200 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 7 1.5127 -4.9308 -0.0024 12 6 2.2076 -6.1346 -0.0031 13 6 3.5982 -6.1271 -0.0037 14 6 4.2790 -7.3319 -0.0049 15 6 3.5437 -8.5086 -0.0108 16 6 2.1615 -8.4435 -0.0048 17 9 1.4396 -9.5856 -0.0053 18 7 1.5391 -7.2780 -0.0037 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.8725 -3.6048 0.8877 23 1 2.8712 -3.6040 -0.8922 24 1 0.5427 -4.9308 -0.0024 25 1 4.1401 -5.1929 -0.0029 26 1 5.3587 -7.3557 -0.0058 27 1 4.0449 -9.4652 -0.0159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307666623.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:41 Heat of formation + Delta-G solvation = -14.815778 kcal Electronic energy + Delta-G solvation = -12796.777575 eV Core-core repulsion = 10275.840268 eV Total energy + Delta-G solvation = -2520.937307 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.86548 -39.90364 -35.91310 -33.19494 -32.38818 -30.39837 -28.33113 -24.93302 -23.42591 -22.42731 -20.86113 -17.98596 -17.33040 -16.41192 -15.92580 -15.88199 -15.20314 -14.57777 -14.37760 -14.25951 -13.27009 -13.03643 -12.94988 -12.34050 -12.10074 -11.24853 -11.17962 -10.71295 -10.66368 -10.01086 -9.78217 -9.50318 -9.38633 -9.36343 -8.50701 -7.47397 -6.15853 -4.20246 1.24657 1.47454 3.22337 3.24273 3.31411 3.34540 3.89213 4.15711 4.36218 4.76294 5.09717 5.21161 5.26674 5.38306 5.90362 5.91870 6.05520 6.10546 6.30012 6.54321 6.68712 7.15556 7.44527 7.51961 7.79301 7.84010 8.13001 8.27864 8.85362 9.45038 10.95652 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.076643 B = 0.005399 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.243260 B = 5184.750672 C = 5529.546173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.126 3.874 11 N -0.708 5.708 12 C 0.443 3.557 13 C -0.252 4.252 14 C -0.009 4.009 15 C -0.273 4.273 16 C 0.353 3.647 17 F -0.120 7.120 18 N -0.586 5.586 19 H 0.263 0.737 20 H 0.025 0.975 21 H 0.025 0.975 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.405 0.595 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 -12.373 -0.007 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.003 3.997 11 N -0.335 5.335 12 C 0.204 3.796 13 C -0.277 4.277 14 C -0.034 4.034 15 C -0.298 4.298 16 C 0.198 3.802 17 F -0.099 7.099 18 N -0.311 5.311 19 H 0.073 0.927 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.241 0.759 25 H 0.159 0.841 26 H 0.157 0.843 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.459 -12.036 -0.002 13.660 hybrid contribution 0.640 0.670 -0.010 0.927 sum 7.099 -11.366 -0.012 13.401 Atomic orbital electron populations 1.69958 1.06136 1.27029 1.49816 1.25011 0.94897 0.99487 0.94874 0.86498 0.79770 0.82967 0.78218 1.20519 1.21119 1.19729 1.20992 0.93123 0.90256 1.52040 0.92209 1.19310 0.94231 0.90714 0.98258 1.21896 0.96509 0.81146 1.00155 1.45273 1.09668 1.02244 1.76365 1.18040 0.88391 0.85042 0.88143 1.21502 0.93110 1.00039 1.13071 1.21125 1.00124 0.90768 0.91387 1.21324 0.92173 1.00612 1.15702 1.17670 0.86347 0.80861 0.95288 1.91590 1.79339 1.45729 1.93221 1.66286 1.42237 0.97167 1.25432 0.92708 0.95717 0.95699 0.92507 0.92518 0.75892 0.84086 0.84260 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 15 7 C -0.53 -13.94 9.11 -34.44 -0.31 -14.25 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 15 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 15 10 C 0.13 2.39 4.83 -4.05 -0.02 2.37 15 11 N -0.71 -12.59 5.73 -60.44 -0.35 -12.94 15 12 C 0.44 7.48 7.65 -155.02 -1.19 6.29 15 13 C -0.25 -3.59 9.32 -39.22 -0.37 -3.96 15 14 C -0.01 -0.10 10.16 -39.34 -0.40 -0.50 15 15 C -0.27 -3.38 10.08 -39.34 -0.40 -3.77 15 16 C 0.35 5.41 8.41 -17.37 -0.15 5.27 15 17 F -0.12 -1.78 17.29 2.25 0.04 -1.74 15 18 N -0.59 -10.24 10.40 -12.78 -0.13 -10.37 15 19 H 0.26 7.18 8.31 -40.82 -0.34 6.85 15 20 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.06 1.05 7.93 -51.93 -0.41 0.64 15 23 H 0.06 1.04 7.93 -51.93 -0.41 0.63 15 24 H 0.41 7.23 8.60 -40.82 -0.35 6.88 15 25 H 0.14 1.87 6.70 -52.49 -0.35 1.52 15 26 H 0.14 1.14 8.06 -52.49 -0.42 0.72 15 27 H 0.14 1.31 8.06 -52.49 -0.42 0.88 15 LS Contribution 247.26 15.07 3.73 3.73 Total: -1.00 -28.87 247.26 -6.82 -35.69 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.76 Total: 1.78 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.07 Total: -6.86 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.26 Total: -48.30 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.87 -6.82 -35.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307666623.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.878 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds