Wall clock time and date at job start Sun Mar 29 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30256 * 125.61670 * 2 1 4 4 C 1.34477 * 108.70172 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.16861 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.66561 * 359.97438 * 4 3 2 7 7 C 1.50700 * 126.44325 * 180.26227 * 6 4 3 8 8 N 1.46495 * 109.47255 * 89.71507 * 7 6 4 9 9 C 1.46491 * 120.00279 * 270.00188 * 8 7 6 10 10 C 1.36945 * 119.99981 * 89.99913 * 8 7 6 11 11 H 1.08001 * 119.99542 * 22.14320 * 10 8 7 12 12 C 1.38805 * 120.00137 * 202.14262 * 10 8 7 13 13 N 1.31625 * 120.00018 * 11.32242 * 12 10 8 14 14 Si 1.86798 * 120.00223 * 191.33129 * 12 10 8 15 15 H 1.48509 * 109.46925 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47804 * 119.99574 * 14 12 10 17 17 H 1.48502 * 109.47191 * 239.99843 * 14 12 10 18 18 O 1.33957 * 125.61763 * 180.02562 * 2 1 3 19 19 H 1.09000 * 109.47144 * 269.97124 * 1 2 3 20 20 H 1.08998 * 109.46893 * 29.97507 * 1 2 3 21 21 H 1.08999 * 109.46977 * 149.97406 * 1 2 3 22 22 H 1.09004 * 109.46605 * 269.97242 * 5 4 3 23 23 H 1.08999 * 109.47139 * 29.97514 * 5 4 3 24 24 H 1.08997 * 109.46748 * 149.97565 * 5 4 3 25 25 H 1.09004 * 109.47292 * 209.71589 * 7 6 4 26 26 H 1.09000 * 109.47152 * 329.71353 * 7 6 4 27 27 H 1.09002 * 109.47254 * 94.13733 * 9 8 7 28 28 H 1.09005 * 109.47296 * 214.14043 * 9 8 7 29 29 H 1.09003 * 109.47168 * 334.14178 * 9 8 7 30 30 H 0.97003 * 119.99558 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7571 1.5728 -0.0002 6 6 3.5698 -0.6756 -0.0004 7 6 4.7937 -1.5548 0.0047 8 7 5.1887 -1.8340 1.3875 9 6 6.1263 -0.9433 2.0756 10 6 4.6814 -2.9277 2.0370 11 1 4.2964 -3.7621 1.4697 12 6 4.6619 -2.9638 3.4245 13 7 4.9187 -1.8729 4.1149 14 14 4.2716 -4.5604 4.3120 15 1 4.0212 -5.6324 3.3151 16 1 5.4202 -4.9424 5.1722 17 1 3.0624 -4.3759 5.1540 18 8 2.2872 -1.0890 -0.0005 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3633 -0.8897 -0.5142 22 1 5.0476 1.7913 -1.0279 23 1 4.5130 2.5024 0.5139 24 1 5.5821 1.0793 0.5134 25 1 4.5702 -2.4918 -0.5055 26 1 5.6087 -1.0461 -0.5103 27 1 5.5693 -0.1995 2.6454 28 1 6.7513 -1.5262 2.7523 29 1 6.7562 -0.4413 1.3411 30 1 4.9055 -1.8983 5.0845 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307681287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:14 Heat of formation + Delta-G solvation = 36.995256 kcal Electronic energy + Delta-G solvation = -14135.714878 eV Core-core repulsion = 11740.484571 eV Total energy + Delta-G solvation = -2395.230307 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.48445 -35.84594 -34.33894 -32.54990 -31.06384 -28.84838 -27.81817 -25.90503 -24.08472 -21.42642 -20.92875 -19.71856 -16.84437 -16.05167 -15.87212 -14.85722 -14.00254 -13.82603 -13.58174 -13.20134 -12.79790 -12.58190 -12.53802 -12.16178 -11.93985 -11.45375 -11.20624 -10.95158 -10.74488 -10.48195 -10.18905 -10.05916 -10.05409 -9.76413 -8.66827 -7.76154 -6.95201 -5.84604 -3.31084 2.25598 3.30067 3.35273 3.39749 3.42327 3.48997 4.42294 4.62651 5.31632 5.45254 5.52503 5.58122 5.64056 5.67264 5.86158 5.94640 6.06467 6.28238 6.29569 6.42203 6.63989 6.70005 6.93196 7.09556 7.28983 7.63866 7.73147 8.25628 8.49587 9.09903 9.69716 10.17194 11.19702 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.010940 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.344512 B = 2558.834600 C = 3042.706944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.150 3.850 3 N -0.484 5.484 4 C -0.045 4.045 5 C -0.062 4.062 6 C -0.023 4.023 7 C 0.219 3.781 8 N -0.581 5.581 9 C 0.159 3.841 10 C -0.261 4.261 11 H 0.074 0.926 12 C 0.006 3.994 13 N -0.902 5.902 14 Si 0.910 3.090 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.289 1.289 18 O -0.196 6.196 19 H 0.083 0.917 20 H 0.091 0.909 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.003 0.997 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 2.907 -7.688 8.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.057 4.057 3 N -0.216 5.216 4 C -0.166 4.166 5 C -0.120 4.120 6 C -0.081 4.081 7 C 0.089 3.911 8 N -0.301 5.301 9 C 0.015 3.985 10 C -0.391 4.391 11 H 0.092 0.908 12 C -0.194 4.194 13 N -0.545 5.545 14 Si 0.739 3.261 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.216 1.216 18 O -0.082 6.082 19 H 0.102 0.898 20 H 0.109 0.891 21 H 0.099 0.901 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.021 0.979 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.002 3.461 -7.462 8.756 hybrid contribution -0.232 -1.288 0.851 1.561 sum -3.234 2.172 -6.611 7.673 Atomic orbital electron populations 1.20042 0.82548 1.03935 1.03906 1.25882 0.96100 0.79667 1.04041 1.70116 1.02085 1.30701 1.18669 1.21264 0.92761 0.92519 1.10057 1.20018 0.92810 0.97738 1.01414 1.25744 0.84129 0.96169 1.02060 1.19749 0.86864 0.95317 0.89167 1.44329 1.47831 1.27953 1.10037 1.20948 0.90874 0.93408 0.93248 1.19348 1.37283 0.93293 0.89145 0.90813 1.25135 1.00005 0.97328 0.96886 1.70095 1.52680 1.25788 1.05968 0.86102 0.77668 0.82692 0.79607 1.20064 1.21363 1.21589 1.84433 1.17156 1.37179 1.69395 0.89798 0.89067 0.90096 0.92023 0.91634 0.90620 0.91827 0.90408 0.95055 0.92970 0.97866 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.63 10.51 36.01 0.38 -0.25 16 2 C 0.15 2.98 8.34 -12.94 -0.11 2.87 16 3 N -0.48 -10.32 11.29 -7.36 -0.08 -10.40 16 4 C -0.05 -0.96 7.11 -82.81 -0.59 -1.55 16 5 C -0.06 -1.08 10.05 36.01 0.36 -0.72 16 6 C -0.02 -0.52 6.97 -35.69 -0.25 -0.76 16 7 C 0.22 4.61 5.86 -5.20 -0.03 4.58 16 8 N -0.58 -14.66 2.91 -182.51 -0.53 -15.19 16 9 C 0.16 3.86 8.14 59.84 0.49 4.35 16 10 C -0.26 -7.22 9.68 -15.06 -0.15 -7.37 16 11 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 12 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 13 N -0.90 -26.42 10.57 55.49 0.59 -25.83 16 14 Si 0.91 21.91 29.57 -169.99 -5.03 16.88 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 18 O -0.20 -4.40 10.78 5.37 0.06 -4.34 16 19 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 20 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.08 1.31 5.97 -51.93 -0.31 1.00 16 25 H 0.06 1.28 8.03 -51.93 -0.42 0.87 16 26 H 0.08 1.39 7.52 -51.93 -0.39 1.00 16 27 H 0.03 0.84 7.43 -51.93 -0.39 0.45 16 28 H 0.05 1.35 7.17 -51.93 -0.37 0.98 16 29 H 0.00 0.06 7.02 -51.93 -0.36 -0.31 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 258.23 15.07 3.89 3.89 Total: -1.00 -32.59 258.23 -4.99 -37.58 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -3.90 Total: -3.80 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 0.02 Total: 1.22 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.03 Total: -51.43 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: 0.06 Total: -4.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.59 -4.99 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.570 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds