Wall clock time and date at job start Sun Mar 29 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30256 * 125.61670 * 2 1 4 4 C 1.34477 * 108.70172 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.16861 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.66561 * 359.97438 * 4 3 2 7 7 C 1.50700 * 126.44325 * 180.26227 * 6 4 3 8 8 N 1.46495 * 109.47255 * 89.71507 * 7 6 4 9 9 C 1.46491 * 120.00279 * 270.00188 * 8 7 6 10 10 C 1.36945 * 119.99981 * 89.99913 * 8 7 6 11 11 H 1.08001 * 119.99542 * 22.14320 * 10 8 7 12 12 C 1.38805 * 120.00137 * 202.14262 * 10 8 7 13 13 N 1.31625 * 120.00018 * 11.32242 * 12 10 8 14 14 Si 1.86798 * 120.00223 * 191.33129 * 12 10 8 15 15 H 1.48509 * 109.46925 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47804 * 119.99574 * 14 12 10 17 17 H 1.48502 * 109.47191 * 239.99843 * 14 12 10 18 18 O 1.33957 * 125.61763 * 180.02562 * 2 1 3 19 19 H 1.09000 * 109.47144 * 269.97124 * 1 2 3 20 20 H 1.08998 * 109.46893 * 29.97507 * 1 2 3 21 21 H 1.08999 * 109.46977 * 149.97406 * 1 2 3 22 22 H 1.09004 * 109.46605 * 269.97242 * 5 4 3 23 23 H 1.08999 * 109.47139 * 29.97514 * 5 4 3 24 24 H 1.08997 * 109.46748 * 149.97565 * 5 4 3 25 25 H 1.09004 * 109.47292 * 209.71589 * 7 6 4 26 26 H 1.09000 * 109.47152 * 329.71353 * 7 6 4 27 27 H 1.09002 * 109.47254 * 94.13733 * 9 8 7 28 28 H 1.09005 * 109.47296 * 214.14043 * 9 8 7 29 29 H 1.09003 * 109.47168 * 334.14178 * 9 8 7 30 30 H 0.97003 * 119.99558 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7571 1.5728 -0.0002 6 6 3.5698 -0.6756 -0.0004 7 6 4.7937 -1.5548 0.0047 8 7 5.1887 -1.8340 1.3875 9 6 6.1263 -0.9433 2.0756 10 6 4.6814 -2.9277 2.0370 11 1 4.2964 -3.7621 1.4697 12 6 4.6619 -2.9638 3.4245 13 7 4.9187 -1.8729 4.1149 14 14 4.2716 -4.5604 4.3120 15 1 4.0212 -5.6324 3.3151 16 1 5.4202 -4.9424 5.1722 17 1 3.0624 -4.3759 5.1540 18 8 2.2872 -1.0890 -0.0005 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3633 -0.8897 -0.5142 22 1 5.0476 1.7913 -1.0279 23 1 4.5130 2.5024 0.5139 24 1 5.5821 1.0793 0.5134 25 1 4.5702 -2.4918 -0.5055 26 1 5.6087 -1.0461 -0.5103 27 1 5.5693 -0.1995 2.6454 28 1 6.7513 -1.5262 2.7523 29 1 6.7562 -0.4413 1.3411 30 1 4.9055 -1.8983 5.0845 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307681287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:14 Heat of formation + Delta-G solvation = 13.690046 kcal Electronic energy + Delta-G solvation = -14136.725468 eV Core-core repulsion = 11740.484571 eV Total energy + Delta-G solvation = -2396.240897 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.09145 -37.72139 -35.95648 -34.24109 -32.82658 -30.19774 -29.48816 -27.91656 -25.74004 -23.26391 -22.51653 -21.33453 -18.85870 -17.71239 -17.50478 -16.76713 -15.66906 -15.46007 -15.33284 -14.92752 -14.11312 -13.99249 -13.81436 -13.73220 -13.40722 -13.14630 -12.89029 -12.81138 -12.54717 -12.34520 -12.07764 -11.93517 -11.73525 -11.42037 -10.74615 -9.37785 -8.94912 -7.92674 -5.42542 0.64932 1.42289 1.43275 1.54337 1.76406 1.99451 2.45363 3.21192 3.28229 3.68290 4.01702 4.10222 4.29702 4.53043 4.62338 4.70703 4.73591 4.78358 4.78759 4.91811 4.99114 5.21784 5.29827 5.34196 5.55756 5.61041 5.68842 6.22330 6.89766 7.04874 7.72000 8.14123 9.10182 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.010940 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.344512 B = 2558.834600 C = 3042.706944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.154 3.846 3 N -0.511 5.511 4 C -0.048 4.048 5 C -0.061 4.061 6 C -0.058 4.058 7 C 0.221 3.779 8 N -0.599 5.599 9 C 0.176 3.824 10 C -0.269 4.269 11 H 0.074 0.926 12 C -0.050 4.050 13 N -0.935 5.935 14 Si 0.972 3.028 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.295 1.295 18 O -0.219 6.219 19 H 0.094 0.906 20 H 0.115 0.885 21 H 0.104 0.896 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.111 0.889 27 H -0.002 1.002 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 2.917 -8.851 9.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.053 4.053 3 N -0.243 5.243 4 C -0.168 4.168 5 C -0.118 4.118 6 C -0.114 4.114 7 C 0.093 3.907 8 N -0.320 5.320 9 C 0.031 3.969 10 C -0.399 4.399 11 H 0.091 0.909 12 C -0.245 4.245 13 N -0.581 5.581 14 Si 0.800 3.200 15 H -0.188 1.188 16 H -0.212 1.212 17 H -0.222 1.222 18 O -0.106 6.106 19 H 0.113 0.887 20 H 0.133 0.867 21 H 0.123 0.877 22 H 0.111 0.889 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.017 0.983 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.591 3.475 -8.666 10.004 hybrid contribution -0.138 -1.215 1.077 1.630 sum -3.729 2.260 -7.589 8.753 Atomic orbital electron populations 1.20403 0.78430 1.06352 1.05257 1.27227 0.98201 0.78708 1.01128 1.70189 1.02404 1.31341 1.20319 1.21891 0.93879 0.92873 1.08167 1.20125 0.91239 0.97000 1.03413 1.25664 0.84419 0.96680 1.04629 1.19855 0.87692 0.96009 0.87145 1.44462 1.48556 1.27844 1.11171 1.20680 0.90422 0.92178 0.93602 1.19636 1.36356 0.94355 0.89581 0.90860 1.25888 1.00707 1.00235 0.97696 1.70265 1.54575 1.27582 1.05676 0.85133 0.76975 0.79518 0.78410 1.18757 1.21162 1.22191 1.84406 1.17719 1.38455 1.69979 0.88743 0.86653 0.87687 0.88915 0.91360 0.90788 0.91343 0.87075 0.98346 0.95577 0.93720 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.15 10.51 71.24 0.75 -0.40 16 2 C 0.15 5.89 8.34 88.34 0.74 6.63 16 3 N -0.51 -21.09 11.29 -291.99 -3.30 -24.38 16 4 C -0.05 -1.98 7.11 41.26 0.29 -1.68 16 5 C -0.06 -1.98 10.05 71.24 0.72 -1.26 16 6 C -0.06 -2.50 6.97 24.79 0.17 -2.33 16 7 C 0.22 9.05 5.86 85.63 0.50 9.55 16 8 N -0.60 -30.02 2.91 -731.33 -2.13 -32.15 16 9 C 0.18 8.51 8.14 127.77 1.04 9.55 16 10 C -0.27 -14.91 9.68 84.03 0.81 -14.09 16 11 H 0.07 3.96 7.84 -2.91 -0.02 3.94 16 12 C -0.05 -2.82 5.13 84.86 0.44 -2.38 16 13 N -0.94 -55.97 10.57 21.65 0.23 -55.74 16 14 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 15 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 18 O -0.22 -9.65 10.78 -3.70 -0.04 -9.69 16 19 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 20 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 21 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.07 2.42 5.97 -2.39 -0.01 2.41 16 25 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 26 H 0.11 3.70 7.52 -2.39 -0.02 3.69 16 27 H 0.00 -0.10 7.43 -2.39 -0.02 -0.12 16 28 H 0.03 1.36 7.17 -2.38 -0.02 1.34 16 29 H 0.04 1.74 7.02 -2.39 -0.02 1.73 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -70.52 258.23 3.38 -67.14 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.13 Total: 3.84 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.46 Total: 3.57 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -5.20 Total: -112.28 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.04 Total: -9.69 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.52 3.38 -67.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.831 kcal (2) G-P(sol) polarization free energy of solvation -70.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds