Wall clock time and date at job start Sun Mar 29 2020 21:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30622 * 128.63838 * 2 1 4 4 O 1.20834 * 109.64469 * 180.02562 * 3 2 1 5 5 N 1.20905 * 115.92671 * 359.71664 * 4 3 2 6 6 C 1.31699 * 109.15435 * 0.45720 * 5 4 3 7 7 C 1.48104 * 128.72447 * 179.86068 * 6 5 4 8 8 O 1.21553 * 120.00338 * 184.52023 * 7 6 5 9 9 N 1.34784 * 119.99665 * 4.24411 * 7 6 5 10 10 C 1.46493 * 120.00017 * 354.82593 * 9 7 6 11 11 C 1.36755 * 119.99589 * 174.81921 * 9 7 6 12 12 H 1.07998 * 120.00265 * 329.00798 * 11 9 7 13 13 C 1.39132 * 119.99502 * 148.99656 * 11 9 7 14 14 N 1.31306 * 119.99914 * 161.82090 * 13 11 9 15 15 Si 1.86803 * 120.00215 * 341.82645 * 13 11 9 16 16 H 1.48499 * 109.47241 * 93.35485 * 15 13 11 17 17 H 1.48501 * 109.46954 * 213.35938 * 15 13 11 18 18 H 1.48498 * 109.46893 * 333.35312 * 15 13 11 19 19 H 1.09000 * 109.46954 * 269.97404 * 1 2 3 20 20 H 1.08992 * 109.47641 * 29.96994 * 1 2 3 21 21 H 1.08997 * 109.47299 * 149.97666 * 1 2 3 22 22 H 1.09000 * 109.47659 * 54.59032 * 10 9 7 23 23 H 1.08997 * 109.47188 * 174.59261 * 10 9 7 24 24 H 1.09004 * 109.47371 * 294.58930 * 10 9 7 25 25 H 0.96999 * 120.00225 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3226 1.0203 0.0000 4 8 3.4652 0.6270 -0.0005 5 7 3.6111 -0.5732 0.0045 6 6 2.4283 -1.1523 -0.0006 7 6 2.1044 -2.5975 -0.0004 8 8 0.9479 -2.9612 -0.0885 9 7 3.0924 -3.5096 0.0920 10 6 4.4920 -3.0772 0.0779 11 6 2.7883 -4.8386 0.1990 12 1 1.8790 -5.1464 0.6939 13 6 3.6502 -5.7942 -0.3299 14 7 3.5665 -7.0438 0.0644 15 14 4.9266 -5.2993 -1.6009 16 1 6.2079 -4.9847 -0.9192 17 1 5.1351 -6.4183 -2.5547 18 1 4.4516 -4.1017 -2.3392 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5133 21 1 -0.3634 -0.8897 -0.5142 22 1 4.6504 -2.3331 0.8585 23 1 5.1393 -3.9356 0.2575 24 1 4.7279 -2.6412 -0.8929 25 1 4.1676 -7.7100 -0.3040 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307685884.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:58 Heat of formation + Delta-G solvation = 75.373136 kcal Electronic energy + Delta-G solvation = -14020.244428 eV Core-core repulsion = 11425.419306 eV Total energy + Delta-G solvation = -2594.825123 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.85827 -40.68932 -37.13407 -36.10283 -35.67578 -34.21501 -30.45614 -28.54961 -28.02961 -25.67456 -23.39802 -21.62924 -20.08241 -19.34911 -18.82796 -18.05744 -17.53316 -16.37185 -15.93698 -15.13750 -14.71944 -14.57678 -14.44364 -14.36311 -14.13626 -13.80670 -12.96581 -12.82473 -12.67084 -12.25618 -12.13897 -11.87398 -11.35078 -11.26038 -10.93956 -10.02383 -8.65845 -6.26437 -0.23421 0.29697 1.17919 1.29381 1.39038 1.92170 1.97875 2.07272 2.41003 2.57486 2.84778 3.01170 3.69634 3.77017 4.14239 4.17256 4.38254 4.61267 4.64848 4.72856 5.13289 5.30166 5.83695 6.26374 6.64294 7.00569 7.42572 7.53193 8.48980 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.047946 B = 0.010768 C = 0.009298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.852442 B = 2599.672038 C = 3010.547406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.058 3.942 3 N -0.363 5.363 4 O 0.342 5.658 5 N -0.332 5.332 6 C -0.040 4.040 7 C 0.519 3.481 8 O -0.581 6.581 9 N -0.444 5.444 10 C 0.051 3.949 11 C -0.339 4.339 12 H 0.067 0.933 13 C 0.021 3.979 14 N -0.889 5.889 15 Si 0.950 3.050 16 H -0.237 1.237 17 H -0.280 1.280 18 H -0.264 1.264 19 H 0.105 0.895 20 H 0.112 0.888 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 12.908 -1.561 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 N -0.090 5.090 4 O 0.118 5.882 5 N -0.053 5.053 6 C -0.204 4.204 7 C 0.307 3.693 8 O -0.465 6.465 9 N -0.164 5.164 10 C -0.091 4.091 11 C -0.466 4.466 12 H 0.085 0.915 13 C -0.185 4.185 14 N -0.525 5.525 15 Si 0.772 3.228 16 H -0.161 1.161 17 H -0.207 1.207 18 H -0.189 1.189 19 H 0.123 0.877 20 H 0.131 0.869 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.504 13.193 -1.584 13.521 hybrid contribution -0.267 -1.010 -0.350 1.102 sum 2.237 12.183 -1.933 12.536 Atomic orbital electron populations 1.20427 0.81261 1.05582 1.05567 1.26543 1.01370 0.84428 0.98384 1.74959 0.91165 1.23872 1.19016 1.84979 1.23312 1.16638 1.63251 1.75514 1.22690 0.92615 1.14509 1.26094 0.88690 0.98122 1.07512 1.16736 0.85874 0.82095 0.84591 1.90634 1.20125 1.79702 1.56017 1.43621 1.05650 1.05835 1.61251 1.22409 0.82174 1.01415 1.03084 1.18885 1.10100 0.79706 1.37950 0.91504 1.26146 0.99994 0.94466 0.97868 1.69732 1.38826 1.03357 1.40600 0.85906 0.79480 0.78437 0.78992 1.16075 1.20660 1.18851 0.87692 0.86936 0.89440 0.89404 0.89914 0.91198 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.25 71.24 0.73 -1.01 15 2 C 0.06 1.83 7.79 45.19 0.35 2.18 15 3 N -0.36 -10.63 12.22 -51.74 -0.63 -11.26 15 4 O 0.34 10.16 11.65 140.85 1.64 11.80 15 5 N -0.33 -11.26 9.31 -51.91 -0.48 -11.74 15 6 C -0.04 -1.54 7.22 44.24 0.32 -1.23 15 7 C 0.52 24.91 7.64 86.86 0.66 25.57 15 8 O -0.58 -31.03 15.75 -3.88 -0.06 -31.10 15 9 N -0.44 -22.00 2.72 -661.95 -1.80 -23.80 15 10 C 0.05 2.06 6.82 127.77 0.87 2.93 15 11 C -0.34 -19.38 9.51 84.14 0.80 -18.58 15 12 H 0.07 4.38 7.83 -2.91 -0.02 4.35 15 13 C 0.02 1.11 5.23 84.99 0.44 1.56 15 14 N -0.89 -50.33 13.95 21.69 0.30 -50.03 15 15 Si 0.95 40.38 24.34 68.60 1.67 42.05 15 16 H -0.24 -8.76 6.70 99.48 0.67 -8.09 15 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 18 H -0.26 -11.21 6.55 99.48 0.65 -10.56 15 19 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 20 H 0.11 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.09 2.50 7.25 -2.39 -0.02 2.48 15 22 H 0.09 3.14 6.76 -2.39 -0.02 3.12 15 23 H 0.08 3.29 4.65 -2.39 -0.01 3.28 15 24 H 0.07 2.60 6.70 -2.39 -0.02 2.58 15 25 H 0.29 14.78 8.31 -92.71 -0.77 14.01 15 Total: -1.00 -64.18 222.54 5.95 -58.23 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.13 Total: 4.43 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 4.18 Total: 11.42 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -2.61 Total: -96.84 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 1.58 Total: -19.29 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.67 Total: 42.05 kcal Total: -64.18 5.95 -58.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685884.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.603 kcal (2) G-P(sol) polarization free energy of solvation -64.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds