Wall clock time and date at job start Sun Mar 29 2020 21:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47486 * 271.95046 * 3 2 1 5 5 H 1.48498 * 109.47306 * 31.95387 * 3 2 1 6 6 H 1.48508 * 109.46864 * 151.95169 * 3 2 1 7 7 C 1.38807 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00025 * 339.46986 * 7 2 1 9 9 N 1.36932 * 119.99998 * 159.47661 * 7 2 1 10 10 C 1.47085 * 120.88213 * 153.50990 * 9 7 2 11 11 C 1.53245 * 108.52064 * 128.79288 * 10 9 7 12 12 N 1.46900 * 109.33848 * 53.82868 * 11 10 9 13 13 C 1.46899 * 111.00163 * 172.74528 * 12 11 10 14 14 C 1.53782 * 113.61765 * 274.14307 * 13 12 11 15 15 C 1.53955 * 87.02010 * 220.04451 * 14 13 12 16 16 C 1.53779 * 113.61706 * 176.52937 * 13 12 11 17 17 C 1.46896 * 111.27472 * 296.89735 * 12 11 10 18 18 C 1.47080 * 120.88121 * 333.49007 * 9 7 2 19 19 H 0.97009 * 119.99909 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.62915 * 9.08331 * 10 9 7 21 21 H 1.08996 * 109.62866 * 248.50054 * 10 9 7 22 22 H 1.09000 * 109.49348 * 173.78957 * 11 10 9 23 23 H 1.08995 * 109.49345 * 293.87143 * 11 10 9 24 24 H 1.09003 * 112.84524 * 45.33242 * 13 12 11 25 25 H 1.09002 * 113.61166 * 334.56314 * 14 13 12 26 26 H 1.08995 * 113.61814 * 105.46007 * 14 13 12 27 27 H 1.08993 * 113.53498 * 270.81103 * 15 14 13 28 28 H 1.09004 * 113.74284 * 139.93945 * 15 14 13 29 29 H 1.09001 * 113.61331 * 254.52989 * 16 13 12 30 30 H 1.08997 * 113.61765 * 25.43706 * 16 13 12 31 31 H 1.09001 * 109.49168 * 303.15004 * 17 12 11 32 32 H 1.08994 * 109.52148 * 183.07662 * 17 12 11 33 33 H 1.08995 * 109.62655 * 350.91327 * 18 9 7 34 34 H 1.08993 * 109.63223 * 111.49952 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4564 2.0703 -1.3992 5 1 1.4689 2.6404 0.7410 6 1 3.5678 1.4286 0.6584 7 6 2.0102 -1.2021 -0.0005 8 1 1.5217 -2.1079 0.3271 9 7 3.3144 -1.2396 -0.4163 10 6 4.2354 -2.2737 0.0794 11 6 4.9156 -2.9366 -1.1232 12 7 5.5361 -1.9026 -1.9621 13 6 6.3435 -2.5061 -3.0307 14 6 7.7815 -2.8420 -2.6013 15 6 8.2269 -2.3399 -3.9869 16 6 6.9535 -1.4776 -3.9976 17 6 4.5275 -0.9897 -2.5162 18 6 3.8312 -0.2470 -1.3707 19 1 -0.4850 0.8401 0.0004 20 1 3.6772 -3.0216 0.6425 21 1 4.9891 -1.8161 0.7200 22 1 5.6815 -3.6282 -0.7722 23 1 4.1731 -3.4811 -1.7066 24 1 5.8343 -3.3289 -3.5326 25 1 8.1455 -2.2288 -1.7770 26 1 7.9533 -3.9070 -2.4459 27 1 8.2337 -3.1178 -4.7502 28 1 9.1482 -1.7577 -3.9674 29 1 6.4578 -1.4429 -4.9677 30 1 7.0908 -0.4907 -3.5557 31 1 3.7903 -1.5613 -3.0802 32 1 5.0113 -0.2694 -3.1757 33 1 3.0059 0.3449 -1.7663 34 1 4.5462 0.4053 -0.8695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307705072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:51 Heat of formation + Delta-G solvation = 54.843970 kcal Electronic energy + Delta-G solvation = -14556.390915 eV Core-core repulsion = 12297.767681 eV Total energy + Delta-G solvation = -2258.623234 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.34179 -36.96392 -33.57351 -31.25870 -30.42299 -26.89250 -25.66722 -23.88994 -22.85828 -22.13611 -19.43575 -19.19209 -16.92526 -15.93287 -15.40198 -14.72457 -14.31534 -14.12947 -13.90923 -13.33405 -12.66757 -12.46316 -12.30679 -12.10214 -11.92526 -11.46433 -10.92487 -10.91317 -10.68927 -10.41067 -10.31595 -10.14236 -9.90390 -9.70958 -9.41204 -8.61156 -7.92275 -6.91801 -5.91540 -3.26280 3.35202 3.51674 3.56848 4.28247 4.56978 4.66925 4.77417 4.92887 5.01522 5.04148 5.36730 5.54414 5.69222 5.77900 5.82050 5.87283 5.89845 5.97290 6.03172 6.06472 6.13181 6.21584 6.35113 6.43804 6.49760 6.63778 6.69719 6.93179 7.54993 7.58166 7.98289 8.35771 8.96959 9.75543 10.15622 11.24594 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.053150 B = 0.008935 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.681156 B = 3132.918077 C = 3394.716699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.152 3.848 11 C 0.043 3.957 12 N -0.524 5.524 13 C 0.052 3.948 14 C -0.124 4.124 15 C -0.142 4.142 16 C -0.133 4.133 17 C 0.043 3.957 18 C 0.130 3.870 19 H 0.262 0.738 20 H 0.064 0.936 21 H 0.029 0.971 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.325 -4.063 -6.686 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.103 0.897 9 N -0.334 5.334 10 C 0.026 3.974 11 C -0.087 4.087 12 N -0.249 5.249 13 C -0.057 4.057 14 C -0.162 4.162 15 C -0.180 4.180 16 C -0.171 4.171 17 C -0.086 4.086 18 C 0.004 3.996 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 14.447 -3.705 -6.352 16.211 hybrid contribution -0.204 0.470 -0.565 0.763 sum 14.243 -3.235 -6.916 16.161 Atomic orbital electron populations 1.69843 1.05708 1.26499 1.53371 1.25259 0.95252 0.97609 0.99665 0.86935 0.79987 0.84520 0.77061 1.21651 1.23205 1.19476 1.18940 0.84818 0.94794 1.40046 0.89717 1.44422 1.08498 1.32181 1.48268 1.21004 0.92007 0.91537 0.92865 1.22595 0.96614 0.93202 0.96244 1.62174 1.24288 1.18492 1.19943 1.23159 0.93558 0.96488 0.92467 1.22970 0.95451 1.00601 0.97226 1.22750 0.97823 0.99648 0.97805 1.23002 0.96488 0.98815 0.98762 1.22598 0.92754 0.95663 0.97594 1.21433 0.96433 0.91979 0.89745 0.92825 0.91763 0.95257 0.91678 0.95114 0.92308 0.89313 0.92143 0.90636 0.91436 0.91954 0.89310 0.94917 0.91552 0.90850 0.95047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.97 55.49 0.78 -27.64 16 2 C 0.02 0.61 5.24 -17.43 -0.09 0.52 16 3 Si 0.88 22.96 24.30 -169.99 -4.13 18.82 16 4 H -0.29 -7.19 6.58 56.52 0.37 -6.82 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -6.96 6.61 56.52 0.37 -6.58 16 7 C -0.26 -7.41 10.08 -15.06 -0.15 -7.56 16 8 H 0.09 2.58 8.05 -52.49 -0.42 2.16 16 9 N -0.61 -15.15 2.82 -172.01 -0.48 -15.64 16 10 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 11 C 0.04 0.76 5.59 -3.70 -0.02 0.74 16 12 N -0.52 -9.07 4.60 -225.37 -1.04 -10.11 16 13 C 0.05 0.73 3.25 -66.90 -0.22 0.51 16 14 C -0.12 -1.48 7.87 -25.83 -0.20 -1.68 16 15 C -0.14 -1.47 8.09 -25.82 -0.21 -1.68 16 16 C -0.13 -1.63 6.43 -25.92 -0.17 -1.79 16 17 C 0.04 0.82 5.42 -3.70 -0.02 0.80 16 18 C 0.13 2.98 4.35 -3.60 -0.02 2.96 16 19 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 20 H 0.06 1.29 7.95 -51.93 -0.41 0.88 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.15 7.71 -51.93 -0.40 0.75 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.12 6.58 -51.93 -0.34 0.78 16 33 H 0.07 1.81 4.60 -51.93 -0.24 1.57 16 34 H 0.03 0.73 6.94 -51.93 -0.36 0.37 16 LS Contribution 260.49 15.07 3.93 3.93 Total: -1.00 -30.80 260.49 -7.67 -38.47 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.59 Total: -3.78 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.12 Total: -4.05 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.75 Total: -53.38 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.13 Total: 18.82 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.80 -7.67 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.313 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds