Wall clock time and date at job start Sun Mar 29 2020 21:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47486 * 271.95046 * 3 2 1 5 5 H 1.48498 * 109.47306 * 31.95387 * 3 2 1 6 6 H 1.48508 * 109.46864 * 151.95169 * 3 2 1 7 7 C 1.38807 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00025 * 339.46986 * 7 2 1 9 9 N 1.36932 * 119.99998 * 159.47661 * 7 2 1 10 10 C 1.47085 * 120.88213 * 153.50990 * 9 7 2 11 11 C 1.53245 * 108.52064 * 128.79288 * 10 9 7 12 12 N 1.46900 * 109.33848 * 53.82868 * 11 10 9 13 13 C 1.46899 * 111.00163 * 172.74528 * 12 11 10 14 14 C 1.53782 * 113.61765 * 274.14307 * 13 12 11 15 15 C 1.53955 * 87.02010 * 220.04451 * 14 13 12 16 16 C 1.53779 * 113.61706 * 176.52937 * 13 12 11 17 17 C 1.46896 * 111.27472 * 296.89735 * 12 11 10 18 18 C 1.47080 * 120.88121 * 333.49007 * 9 7 2 19 19 H 0.97009 * 119.99909 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.62915 * 9.08331 * 10 9 7 21 21 H 1.08996 * 109.62866 * 248.50054 * 10 9 7 22 22 H 1.09000 * 109.49348 * 173.78957 * 11 10 9 23 23 H 1.08995 * 109.49345 * 293.87143 * 11 10 9 24 24 H 1.09003 * 112.84524 * 45.33242 * 13 12 11 25 25 H 1.09002 * 113.61166 * 334.56314 * 14 13 12 26 26 H 1.08995 * 113.61814 * 105.46007 * 14 13 12 27 27 H 1.08993 * 113.53498 * 270.81103 * 15 14 13 28 28 H 1.09004 * 113.74284 * 139.93945 * 15 14 13 29 29 H 1.09001 * 113.61331 * 254.52989 * 16 13 12 30 30 H 1.08997 * 113.61765 * 25.43706 * 16 13 12 31 31 H 1.09001 * 109.49168 * 303.15004 * 17 12 11 32 32 H 1.08994 * 109.52148 * 183.07662 * 17 12 11 33 33 H 1.08995 * 109.62655 * 350.91327 * 18 9 7 34 34 H 1.08993 * 109.63223 * 111.49952 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4564 2.0703 -1.3992 5 1 1.4689 2.6404 0.7410 6 1 3.5678 1.4286 0.6584 7 6 2.0102 -1.2021 -0.0005 8 1 1.5217 -2.1079 0.3271 9 7 3.3144 -1.2396 -0.4163 10 6 4.2354 -2.2737 0.0794 11 6 4.9156 -2.9366 -1.1232 12 7 5.5361 -1.9026 -1.9621 13 6 6.3435 -2.5061 -3.0307 14 6 7.7815 -2.8420 -2.6013 15 6 8.2269 -2.3399 -3.9869 16 6 6.9535 -1.4776 -3.9976 17 6 4.5275 -0.9897 -2.5162 18 6 3.8312 -0.2470 -1.3707 19 1 -0.4850 0.8401 0.0004 20 1 3.6772 -3.0216 0.6425 21 1 4.9891 -1.8161 0.7200 22 1 5.6815 -3.6282 -0.7722 23 1 4.1731 -3.4811 -1.7066 24 1 5.8343 -3.3289 -3.5326 25 1 8.1455 -2.2288 -1.7770 26 1 7.9533 -3.9070 -2.4459 27 1 8.2337 -3.1178 -4.7502 28 1 9.1482 -1.7577 -3.9674 29 1 6.4578 -1.4429 -4.9677 30 1 7.0908 -0.4907 -3.5557 31 1 3.7903 -1.5613 -3.0802 32 1 5.0113 -0.2694 -3.1757 33 1 3.0059 0.3449 -1.7663 34 1 4.5462 0.4053 -0.8695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307705072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:51 Heat of formation + Delta-G solvation = 33.618496 kcal Electronic energy + Delta-G solvation = -14557.311321 eV Core-core repulsion = 12297.767681 eV Total energy + Delta-G solvation = -2259.543640 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56521 -38.44474 -35.31901 -33.28980 -32.05777 -28.61290 -26.67621 -25.40984 -24.40219 -23.73324 -21.12783 -20.19041 -18.87083 -17.58393 -16.67306 -16.21439 -15.94939 -15.76456 -15.53745 -14.88681 -14.45334 -14.11224 -13.72011 -13.56822 -13.26018 -12.82719 -12.64446 -12.31009 -12.17969 -12.03507 -11.86503 -11.57077 -11.42359 -11.28495 -11.01150 -10.71461 -9.36053 -8.91883 -8.19134 -5.50794 1.28142 1.39995 1.50261 2.39790 2.91475 3.05770 3.34815 3.67854 3.85087 4.00284 4.06129 4.15585 4.21121 4.43529 4.50294 4.53496 4.66939 4.70624 4.78845 4.88347 4.93195 4.98150 4.99077 5.09162 5.13744 5.25660 5.39034 5.54899 5.80236 6.07748 6.11688 6.31792 6.86989 7.58279 8.01423 9.00750 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.053150 B = 0.008935 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.681156 B = 3132.918077 C = 3394.716699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.036 4.036 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.308 1.308 6 H -0.265 1.265 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.625 5.625 10 C 0.147 3.853 11 C 0.053 3.947 12 N -0.528 5.528 13 C 0.040 3.960 14 C -0.120 4.120 15 C -0.128 4.128 16 C -0.134 4.134 17 C 0.054 3.946 18 C 0.125 3.875 19 H 0.262 0.738 20 H 0.061 0.939 21 H 0.037 0.963 22 H 0.096 0.904 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.017 0.983 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.184 -3.990 -7.794 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.237 1.237 6 H -0.190 1.190 7 C -0.381 4.381 8 H 0.070 0.930 9 N -0.350 5.350 10 C 0.022 3.978 11 C -0.076 4.076 12 N -0.253 5.253 13 C -0.068 4.068 14 C -0.157 4.157 15 C -0.166 4.166 16 C -0.172 4.172 17 C -0.075 4.075 18 C 0.000 4.000 19 H 0.071 0.929 20 H 0.079 0.921 21 H 0.055 0.945 22 H 0.114 0.886 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 17.360 -3.652 -7.479 19.252 hybrid contribution -1.078 0.337 -0.213 1.149 sum 16.282 -3.315 -7.692 18.310 Atomic orbital electron populations 1.69968 1.07343 1.27286 1.55727 1.25889 0.95886 1.00988 1.00269 0.85878 0.78453 0.80060 0.77792 1.19807 1.23676 1.18990 1.18890 0.86584 0.93702 1.38913 0.92985 1.44572 1.07795 1.33499 1.49141 1.21183 0.91534 0.90668 0.94457 1.22440 0.96970 0.93276 0.94891 1.62195 1.23367 1.18513 1.21193 1.23383 0.93919 0.97205 0.92281 1.22945 0.93455 1.01358 0.97988 1.22713 0.97360 0.99475 0.97034 1.23023 0.97438 0.98315 0.98416 1.22386 0.92929 0.96184 0.96011 1.21456 0.95961 0.91979 0.90566 0.92870 0.92094 0.94537 0.88559 0.96478 0.92342 0.89973 0.90929 0.89203 0.90114 0.91329 0.89917 0.96438 0.88989 0.92914 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.36 13.97 21.65 0.30 -61.06 16 2 C -0.04 -2.14 5.24 84.86 0.44 -1.70 16 3 Si 0.95 47.91 24.30 68.60 1.67 49.58 16 4 H -0.27 -12.83 6.58 99.48 0.65 -12.17 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.27 -13.03 6.61 99.48 0.66 -12.38 16 7 C -0.25 -14.80 10.08 84.03 0.85 -13.96 16 8 H 0.05 3.33 8.05 -2.91 -0.02 3.30 16 9 N -0.62 -30.99 2.82 -698.12 -1.97 -32.96 16 10 C 0.15 5.95 6.69 86.35 0.58 6.53 16 11 C 0.05 1.79 5.59 86.39 0.48 2.27 16 12 N -0.53 -16.98 4.60 -866.93 -3.99 -20.97 16 13 C 0.04 1.00 3.25 45.44 0.15 1.15 16 14 C -0.12 -2.39 7.87 31.18 0.25 -2.14 16 15 C -0.13 -2.12 8.09 31.18 0.25 -1.87 16 16 C -0.13 -2.82 6.43 31.12 0.20 -2.62 16 17 C 0.05 1.97 5.42 86.39 0.47 2.44 16 18 C 0.13 5.61 4.35 86.35 0.38 5.98 16 19 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 20 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.10 2.64 8.09 -2.39 -0.02 2.62 16 23 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.86 7.71 -2.39 -0.02 1.84 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 2.86 6.58 -2.39 -0.02 2.84 16 33 H 0.05 2.56 4.60 -2.39 -0.01 2.55 16 34 H 0.03 1.52 6.94 -2.39 -0.02 1.51 16 Total: -1.00 -66.62 260.49 1.00 -65.62 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 0.95 Total: 3.71 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 4.04 Total: -3.91 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.66 Total: -114.99 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.67 Total: 49.58 kcal Total: -66.62 1.00 -65.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.237 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds