Wall clock time and date at job start Sun Mar 29 2020 21:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.46846 * 110.99795 * 292.93222 * 13 12 10 15 15 C 1.50138 * 110.27903 * 287.51693 * 14 13 12 16 16 C 1.29827 * 123.28980 * 342.99329 * 15 14 13 17 17 C 1.50309 * 122.88419 * 0.32151 * 16 15 14 18 18 C 1.47242 * 111.00517 * 170.00162 * 13 12 10 19 19 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 21 21 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 22 22 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 23 23 H 1.08999 * 109.33840 * 47.78395 * 14 13 12 24 24 H 1.08999 * 109.33446 * 167.28573 * 14 13 12 25 25 H 1.08004 * 118.35463 * 162.94375 * 15 14 13 26 26 H 1.07990 * 118.55498 * 180.34940 * 16 15 14 27 27 H 1.08998 * 109.42897 * 223.44979 * 17 16 15 28 28 H 1.09001 * 109.42532 * 103.60923 * 17 16 15 29 29 H 1.08992 * 109.64177 * 174.27787 * 18 13 12 30 30 H 1.09003 * 109.63247 * 294.89131 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 2.9462 -6.0329 -1.2599 15 6 2.0589 -6.5166 -2.3703 16 6 0.9323 -7.1288 -2.1668 17 6 0.3939 -7.4119 -0.7923 18 6 1.5122 -7.2602 0.2419 19 1 -0.4850 0.8401 -0.0004 20 1 0.3533 -2.3906 0.0016 21 1 0.6174 -4.9204 0.8924 22 1 0.6167 -4.9209 -0.8875 23 1 3.3174 -5.0371 -1.5019 24 1 3.7906 -6.7134 -1.1506 25 1 2.3733 -6.3459 -3.3894 26 1 0.3570 -7.4492 -3.0228 27 1 0.0039 -8.4291 -0.7581 28 1 -0.4079 -6.7092 -0.5653 29 1 2.2217 -8.0809 0.1373 30 1 1.0864 -7.2657 1.2453 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307723218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:16 Heat of formation + Delta-G solvation = -12.584985 kcal Electronic energy + Delta-G solvation = -13905.079407 eV Core-core repulsion = 11507.699139 eV Total energy + Delta-G solvation = -2397.380268 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.54627 -37.48792 -33.91329 -32.38102 -31.18762 -30.62502 -27.82594 -24.69054 -23.42332 -22.16784 -19.40643 -18.01792 -17.15224 -16.37213 -15.83954 -14.81534 -14.57459 -14.16309 -13.92143 -13.55201 -13.37965 -12.59869 -12.36347 -12.23853 -11.68999 -11.46003 -11.26933 -11.11029 -10.76590 -10.57140 -10.41432 -10.17706 -9.44663 -8.85885 -8.35910 -7.92606 -7.77784 -6.37874 -3.78593 2.37336 3.22618 3.27812 3.32388 3.96310 4.10500 4.32081 4.91164 5.07752 5.18667 5.24574 5.30597 5.36768 5.65531 5.77341 5.82428 5.92758 6.03835 6.08215 6.10890 6.34977 6.35954 6.68506 7.01320 7.39101 7.44322 7.58539 8.10599 8.66463 9.22050 9.59268 10.11459 10.79984 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058696 B = 0.007280 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.919605 B = 3845.170956 C = 3956.546606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.041 3.959 13 N -0.505 5.505 14 C 0.073 3.927 15 C -0.178 4.178 16 C -0.170 4.170 17 C -0.129 4.129 18 C 0.051 3.949 19 H 0.271 0.729 20 H 0.392 0.608 21 H 0.086 0.914 22 H 0.053 0.947 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -11.530 -2.246 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.231 3.769 11 O -0.463 6.463 12 C -0.090 4.090 13 N -0.227 5.227 14 C -0.054 4.054 15 C -0.197 4.197 16 C -0.188 4.188 17 C -0.167 4.167 18 C -0.078 4.078 19 H 0.081 0.919 20 H 0.225 0.775 21 H 0.104 0.896 22 H 0.071 0.929 23 H 0.126 0.874 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.420 -11.264 -1.835 11.420 hybrid contribution -0.976 0.692 -0.838 1.460 sum -1.396 -10.573 -2.673 10.994 Atomic orbital electron populations 1.69608 1.05929 1.28183 1.50754 1.25249 0.95623 0.99673 0.97418 0.85925 0.78754 0.80525 0.79050 1.19956 1.21005 1.19895 1.19657 0.93337 0.82270 1.47573 0.87977 1.41862 1.09165 1.04579 1.64599 1.19783 0.88403 0.84597 0.84123 1.90483 1.13742 1.86992 1.55127 1.21896 0.94343 0.91202 1.01601 1.62332 1.25495 1.01597 1.33228 1.21277 0.95165 1.03721 0.85261 1.23094 0.97332 0.98416 1.00878 1.22062 0.97741 1.01369 0.97658 1.21107 0.99651 1.01962 0.94029 1.22314 0.94958 0.92354 0.98155 0.91876 0.77528 0.89588 0.92895 0.87362 0.90043 0.87782 0.88183 0.90959 0.90697 0.90638 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 10 C 0.45 10.80 7.39 -10.99 -0.08 10.72 16 11 O -0.58 -15.87 14.08 5.55 0.08 -15.79 16 12 C 0.04 0.77 4.52 -4.98 -0.02 0.75 16 13 N -0.51 -8.84 4.75 -237.57 -1.13 -9.97 16 14 C 0.07 1.25 5.57 -5.28 -0.03 1.22 16 15 C -0.18 -2.60 9.37 -35.97 -0.34 -2.94 16 16 C -0.17 -2.25 9.29 -35.89 -0.33 -2.59 16 17 C -0.13 -1.57 5.54 -28.03 -0.16 -1.72 16 18 C 0.05 0.68 6.02 -3.59 -0.02 0.66 16 19 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 20 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 21 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 22 H 0.05 0.95 6.04 -51.93 -0.31 0.64 16 23 H 0.11 2.20 5.87 -51.93 -0.30 1.90 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.10 1.40 8.06 -52.48 -0.42 0.97 16 26 H 0.10 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.93 7.16 -51.93 -0.37 0.56 16 29 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 250.04 15.07 3.77 3.77 Total: -1.00 -30.71 250.04 -6.64 -37.35 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.78 Total: 9.27 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.22 Total: -2.01 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.46 Total: -48.86 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.08 Total: -15.79 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.71 -6.64 -37.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307723218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.763 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds