Wall clock time and date at job start Sun Mar 29 2020 21:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.46846 * 110.99795 * 292.93222 * 13 12 10 15 15 C 1.50138 * 110.27903 * 287.51693 * 14 13 12 16 16 C 1.29827 * 123.28980 * 342.99329 * 15 14 13 17 17 C 1.50309 * 122.88419 * 0.32151 * 16 15 14 18 18 C 1.47242 * 111.00517 * 170.00162 * 13 12 10 19 19 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 21 21 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 22 22 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 23 23 H 1.08999 * 109.33840 * 47.78395 * 14 13 12 24 24 H 1.08999 * 109.33446 * 167.28573 * 14 13 12 25 25 H 1.08004 * 118.35463 * 162.94375 * 15 14 13 26 26 H 1.07990 * 118.55498 * 180.34940 * 16 15 14 27 27 H 1.08998 * 109.42897 * 223.44979 * 17 16 15 28 28 H 1.09001 * 109.42532 * 103.60923 * 17 16 15 29 29 H 1.08992 * 109.64177 * 174.27787 * 18 13 12 30 30 H 1.09003 * 109.63247 * 294.89131 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 2.9462 -6.0329 -1.2599 15 6 2.0589 -6.5166 -2.3703 16 6 0.9323 -7.1288 -2.1668 17 6 0.3939 -7.4119 -0.7923 18 6 1.5122 -7.2602 0.2419 19 1 -0.4850 0.8401 -0.0004 20 1 0.3533 -2.3906 0.0016 21 1 0.6174 -4.9204 0.8924 22 1 0.6167 -4.9209 -0.8875 23 1 3.3174 -5.0371 -1.5019 24 1 3.7906 -6.7134 -1.1506 25 1 2.3733 -6.3459 -3.3894 26 1 0.3570 -7.4492 -3.0228 27 1 0.0039 -8.4291 -0.7581 28 1 -0.4079 -6.7092 -0.5653 29 1 2.2217 -8.0809 0.1373 30 1 1.0864 -7.2657 1.2453 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307723218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:16 Heat of formation + Delta-G solvation = -35.074090 kcal Electronic energy + Delta-G solvation = -13906.054607 eV Core-core repulsion = 11507.699139 eV Total energy + Delta-G solvation = -2398.355468 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97094 -39.23992 -35.95373 -33.67646 -33.22477 -31.73801 -29.39383 -26.61602 -24.63815 -23.42379 -21.20347 -19.98164 -18.57828 -17.85482 -17.20270 -16.56580 -16.28155 -15.82394 -15.41211 -15.07401 -14.62822 -14.10679 -13.99663 -13.49146 -13.35085 -12.97812 -12.91856 -12.52240 -12.41998 -12.13038 -12.11571 -11.63394 -11.45362 -10.29852 -10.02293 -9.90294 -9.13117 -8.45765 -5.94696 1.29500 1.40121 1.41452 1.52691 2.06479 2.29342 2.85337 3.20875 3.42644 3.95464 4.02745 4.13159 4.29872 4.36506 4.47124 4.53234 4.67668 4.75210 4.84656 4.98274 5.02653 5.13237 5.41057 5.62255 5.85388 5.96328 6.14624 6.22149 6.61572 7.13454 7.57078 8.13162 8.71614 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058696 B = 0.007280 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.919605 B = 3845.170956 C = 3956.546606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.616 6.616 12 C 0.057 3.943 13 N -0.527 5.527 14 C 0.078 3.922 15 C -0.201 4.201 16 C -0.155 4.155 17 C -0.128 4.128 18 C 0.049 3.951 19 H 0.278 0.722 20 H 0.395 0.605 21 H 0.108 0.892 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 -12.426 -2.264 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.502 6.502 12 C -0.074 4.074 13 N -0.250 5.250 14 C -0.050 4.050 15 C -0.221 4.221 16 C -0.173 4.173 17 C -0.167 4.167 18 C -0.078 4.078 19 H 0.087 0.913 20 H 0.229 0.771 21 H 0.126 0.874 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.128 0.872 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.642 -12.185 -1.854 12.435 hybrid contribution -0.603 0.884 -0.823 1.350 sum -2.245 -11.301 -2.677 11.829 Atomic orbital electron populations 1.69671 1.06844 1.29345 1.50381 1.26041 0.96555 1.02397 0.96277 0.84990 0.77769 0.76628 0.78950 1.19734 1.19385 1.19680 1.19642 0.92712 0.84039 1.50014 0.90320 1.41931 1.09254 1.04703 1.65330 1.20810 0.88321 0.85979 0.82027 1.90458 1.15718 1.87831 1.56187 1.21719 0.93931 0.88700 1.03048 1.62291 1.26059 1.02987 1.33644 1.21059 0.96095 1.01572 0.86300 1.22972 0.98238 1.00537 1.00322 1.22389 0.96673 0.99158 0.99122 1.21161 0.98986 1.03876 0.92635 1.22452 0.95555 0.90341 0.99443 0.91292 0.77110 0.87445 0.91725 0.91697 0.89379 0.87215 0.86100 0.87894 0.90429 0.89514 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.47 13.05 21.66 0.28 -50.19 16 2 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 3 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -30.41 5.29 -306.99 -1.62 -32.03 16 10 C 0.44 21.83 7.39 87.66 0.65 22.48 16 11 O -0.62 -35.01 14.08 -3.07 -0.04 -35.06 16 12 C 0.06 2.10 4.52 85.56 0.39 2.49 16 13 N -0.53 -17.93 4.75 -905.54 -4.30 -22.23 16 14 C 0.08 2.65 5.57 85.39 0.48 3.12 16 15 C -0.20 -5.65 9.37 26.68 0.25 -5.40 16 16 C -0.16 -3.65 9.29 26.73 0.25 -3.40 16 17 C -0.13 -2.63 5.54 29.75 0.16 -2.47 16 18 C 0.05 1.18 6.02 86.27 0.52 1.70 16 19 H 0.28 14.23 8.31 -92.70 -0.77 13.46 16 20 H 0.40 19.88 7.90 -92.71 -0.73 19.15 16 21 H 0.11 3.47 8.08 -2.39 -0.02 3.45 16 22 H 0.06 2.23 6.04 -2.39 -0.01 2.21 16 23 H 0.06 2.77 5.87 -2.39 -0.01 2.75 16 24 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.11 2.88 8.06 -2.91 -0.02 2.85 16 26 H 0.12 2.37 8.06 -2.92 -0.02 2.35 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.62 7.16 -2.39 -0.02 1.60 16 29 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.76 250.04 0.72 -66.04 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.41 Total: 28.25 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 3.97 Total: -0.32 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -5.64 Total: -104.46 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.04 Total: -35.06 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -66.76 0.72 -66.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307723218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.963 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds