Wall clock time and date at job start Sun Mar 29 2020 21:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00303 * 2 1 4 4 C 1.50693 * 109.47435 * 66.04474 * 3 2 1 5 5 H 1.08009 * 119.99908 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00463 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00389 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99592 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47385 * 90.00151 * 8 6 4 10 10 H 1.48507 * 109.47204 * 210.00219 * 8 6 4 11 11 H 1.48498 * 109.47039 * 329.99885 * 8 6 4 12 12 C 1.46898 * 111.00133 * 236.04092 * 2 1 3 13 13 C 1.50698 * 109.47203 * 293.95631 * 12 2 1 14 14 N 1.30517 * 126.34522 * 269.95285 * 13 12 2 15 15 N 1.28600 * 109.67250 * 180.02562 * 14 13 12 16 16 C 1.30526 * 109.67197 * 359.72320 * 15 14 13 17 17 N 1.35494 * 107.30545 * 0.43817 * 16 15 14 18 18 C 1.46499 * 126.97935 * 179.83284 * 17 16 15 19 19 H 1.09001 * 109.47102 * 183.96207 * 1 2 3 20 20 H 1.09007 * 109.46920 * 303.95560 * 1 2 3 21 21 H 1.08995 * 109.47001 * 63.95212 * 1 2 3 22 22 H 1.08994 * 109.47333 * 186.04708 * 3 2 1 23 23 H 1.08998 * 109.46664 * 306.04445 * 3 2 1 24 24 H 0.96999 * 119.99919 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.47319 * 173.95505 * 12 2 1 26 26 H 1.09004 * 109.46813 * 53.95629 * 12 2 1 27 27 H 1.07996 * 126.34830 * 180.29376 * 16 15 14 28 28 H 1.09002 * 109.47391 * 269.68706 * 18 17 16 29 29 H 1.09001 * 109.46813 * 149.68762 * 18 17 16 30 30 H 1.09004 * 109.47041 * 29.68889 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2983 5 1 1.0746 1.5113 2.0488 6 6 2.0269 3.3495 1.5284 7 7 1.7145 3.9391 2.6617 8 14 3.0002 4.2760 0.2308 9 1 2.0636 4.9797 -0.6819 10 1 3.8866 5.2678 0.8912 11 1 3.8241 3.3173 -0.5484 12 6 1.9954 -0.7661 -1.1375 13 6 1.6369 -2.2205 -0.9727 14 7 2.3501 -3.1289 -0.3648 15 7 1.7424 -4.2611 -0.4142 16 6 0.6110 -4.1251 -1.0508 17 7 0.5146 -2.8275 -1.4286 18 6 -0.5831 -2.2058 -2.1734 19 1 -0.3633 -1.0252 0.0710 20 1 -0.3633 0.5740 0.8525 21 1 -0.3633 0.4513 -0.9232 22 1 3.0797 1.3444 -0.1083 23 1 1.5612 1.9273 -0.8309 24 1 1.9891 4.8552 2.8237 25 1 3.0797 -0.6612 -1.1755 26 1 1.5611 -0.3873 -2.0627 27 1 -0.1129 -4.9032 -1.2429 28 1 -0.3786 -2.2689 -3.2422 29 1 -0.6731 -1.1594 -1.8819 30 1 -1.5144 -2.7265 -1.9503 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308103067.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:45 Heat of formation + Delta-G solvation = 96.081476 kcal Electronic energy + Delta-G solvation = -13864.655871 eV Core-core repulsion = 11504.280486 eV Total energy + Delta-G solvation = -2360.375385 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.94282 -37.06039 -34.85890 -32.64523 -31.01884 -28.09951 -27.99232 -26.71390 -24.07192 -22.18226 -20.98681 -19.98550 -17.25808 -16.79132 -16.36448 -15.26511 -14.90680 -14.42777 -14.24787 -13.91465 -13.51548 -12.87460 -12.65830 -12.41474 -11.87900 -11.46632 -11.30468 -11.12240 -10.77513 -10.44535 -10.13797 -10.09309 -9.92512 -9.38344 -9.05392 -8.62955 -7.59971 -6.09822 -4.08388 1.92746 2.56358 3.08897 3.23887 3.33078 3.33777 4.37059 4.43058 4.53213 4.62674 4.78392 4.88893 5.12797 5.17239 5.22738 5.61350 5.77528 5.81700 5.87862 6.06086 6.29503 6.47671 6.67989 6.83215 6.94022 7.46402 7.70337 7.84351 8.56715 8.94554 8.98222 9.50327 11.03158 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.054910 B = 0.007365 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.801671 B = 3801.065006 C = 3840.280557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.522 5.522 3 C 0.164 3.836 4 C -0.512 4.512 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.134 3.866 13 C 0.201 3.799 14 N -0.282 5.282 15 N -0.301 5.301 16 C 0.137 3.863 17 N -0.478 5.478 18 C 0.062 3.938 19 H 0.044 0.956 20 H 0.087 0.913 21 H 0.015 0.985 22 H 0.035 0.965 23 H -0.013 1.013 24 H 0.265 0.735 25 H 0.106 0.894 26 H 0.043 0.957 27 H 0.214 0.786 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -9.899 -12.577 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.247 5.247 3 C 0.039 3.961 4 C -0.551 4.551 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.004 3.996 13 C -0.067 4.067 14 N -0.122 5.122 15 N -0.140 5.140 16 C -0.150 4.150 17 N -0.170 5.170 18 C -0.081 4.081 19 H 0.062 0.938 20 H 0.106 0.894 21 H 0.033 0.967 22 H 0.052 0.948 23 H 0.005 0.995 24 H 0.075 0.925 25 H 0.124 0.876 26 H 0.061 0.939 27 H 0.231 0.769 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.505 -10.590 -11.284 16.118 hybrid contribution -1.058 1.494 -2.068 2.761 sum -5.563 -9.096 -13.352 17.087 Atomic orbital electron populations 1.22465 0.88416 0.99683 1.01212 1.61891 1.07278 1.16838 1.38651 1.20236 0.95639 0.82835 0.97437 1.20979 1.36021 0.97210 1.00860 0.90063 1.24889 0.95647 0.97310 0.95378 1.69888 1.46624 1.13294 1.23834 0.86862 0.80652 0.80133 0.82099 1.20375 1.21006 1.19035 1.20468 1.02331 0.83382 0.93443 1.24948 0.85245 0.98403 0.98076 1.74284 1.25009 0.95361 1.17587 1.74244 1.04699 1.17868 1.17226 1.26316 1.00487 0.86347 1.01896 1.46239 1.18229 1.09609 1.42885 1.22312 0.88201 1.01083 0.96489 0.93780 0.89393 0.96667 0.94751 0.99503 0.92545 0.87599 0.93878 0.76928 0.90196 0.88337 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 7.81 60.06 0.47 1.02 16 2 N -0.52 -10.73 4.74 -245.84 -1.17 -11.89 16 3 C 0.16 3.83 3.79 -4.98 -0.02 3.82 16 4 C -0.51 -14.31 9.01 -34.44 -0.31 -14.62 16 5 H 0.08 2.49 7.37 -52.48 -0.39 2.11 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 8 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 12 C 0.13 2.27 5.20 -4.98 -0.03 2.24 16 13 C 0.20 3.37 6.65 -154.99 -1.03 2.34 16 14 N -0.28 -5.52 12.21 32.80 0.40 -5.12 16 15 N -0.30 -5.30 12.21 29.69 0.36 -4.93 16 16 C 0.14 1.76 12.74 -89.94 -1.15 0.61 16 17 N -0.48 -6.14 2.77 -122.69 -0.34 -6.48 16 18 C 0.06 0.51 10.16 59.85 0.61 1.11 16 19 H 0.04 0.71 5.84 -51.93 -0.30 0.40 16 20 H 0.09 1.80 6.76 -51.92 -0.35 1.45 16 21 H 0.02 0.24 7.16 -51.93 -0.37 -0.14 16 22 H 0.03 0.81 6.99 -51.93 -0.36 0.45 16 23 H -0.01 -0.28 7.55 -51.93 -0.39 -0.68 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.11 1.79 7.93 -51.93 -0.41 1.38 16 26 H 0.04 0.61 7.84 -51.93 -0.41 0.21 16 27 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.90 4.70 -51.93 -0.24 0.66 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 249.75 15.07 3.76 3.76 Total: -1.00 -34.14 249.75 -6.09 -40.23 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -3.67 Total: -3.81 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.55 Total: -1.59 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.03 Total: -54.84 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.14 -6.09 -40.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308103067.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.312 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds