Wall clock time and date at job start Sun Mar 29 2020 21:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00303 * 2 1 4 4 C 1.50693 * 109.47435 * 66.04474 * 3 2 1 5 5 H 1.08009 * 119.99908 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00463 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00389 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99592 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47385 * 90.00151 * 8 6 4 10 10 H 1.48507 * 109.47204 * 210.00219 * 8 6 4 11 11 H 1.48498 * 109.47039 * 329.99885 * 8 6 4 12 12 C 1.46898 * 111.00133 * 236.04092 * 2 1 3 13 13 C 1.50698 * 109.47203 * 293.95631 * 12 2 1 14 14 N 1.30517 * 126.34522 * 269.95285 * 13 12 2 15 15 N 1.28600 * 109.67250 * 180.02562 * 14 13 12 16 16 C 1.30526 * 109.67197 * 359.72320 * 15 14 13 17 17 N 1.35494 * 107.30545 * 0.43817 * 16 15 14 18 18 C 1.46499 * 126.97935 * 179.83284 * 17 16 15 19 19 H 1.09001 * 109.47102 * 183.96207 * 1 2 3 20 20 H 1.09007 * 109.46920 * 303.95560 * 1 2 3 21 21 H 1.08995 * 109.47001 * 63.95212 * 1 2 3 22 22 H 1.08994 * 109.47333 * 186.04708 * 3 2 1 23 23 H 1.08998 * 109.46664 * 306.04445 * 3 2 1 24 24 H 0.96999 * 119.99919 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.47319 * 173.95505 * 12 2 1 26 26 H 1.09004 * 109.46813 * 53.95629 * 12 2 1 27 27 H 1.07996 * 126.34830 * 180.29376 * 16 15 14 28 28 H 1.09002 * 109.47391 * 269.68706 * 18 17 16 29 29 H 1.09001 * 109.46813 * 149.68762 * 18 17 16 30 30 H 1.09004 * 109.47041 * 29.68889 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2983 5 1 1.0746 1.5113 2.0488 6 6 2.0269 3.3495 1.5284 7 7 1.7145 3.9391 2.6617 8 14 3.0002 4.2760 0.2308 9 1 2.0636 4.9797 -0.6819 10 1 3.8866 5.2678 0.8912 11 1 3.8241 3.3173 -0.5484 12 6 1.9954 -0.7661 -1.1375 13 6 1.6369 -2.2205 -0.9727 14 7 2.3501 -3.1289 -0.3648 15 7 1.7424 -4.2611 -0.4142 16 6 0.6110 -4.1251 -1.0508 17 7 0.5146 -2.8275 -1.4286 18 6 -0.5831 -2.2058 -2.1734 19 1 -0.3633 -1.0252 0.0710 20 1 -0.3633 0.5740 0.8525 21 1 -0.3633 0.4513 -0.9232 22 1 3.0797 1.3444 -0.1083 23 1 1.5612 1.9273 -0.8309 24 1 1.9891 4.8552 2.8237 25 1 3.0797 -0.6612 -1.1755 26 1 1.5611 -0.3873 -2.0627 27 1 -0.1129 -4.9032 -1.2429 28 1 -0.3786 -2.2689 -3.2422 29 1 -0.6731 -1.1594 -1.8819 30 1 -1.5144 -2.7265 -1.9503 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308103067.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:45 Heat of formation + Delta-G solvation = 71.072510 kcal Electronic energy + Delta-G solvation = -13865.740342 eV Core-core repulsion = 11504.280486 eV Total energy + Delta-G solvation = -2361.459855 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.06183 -38.58938 -35.90609 -34.69324 -32.38650 -29.92703 -28.99791 -27.84348 -25.76719 -23.24307 -22.64106 -21.29228 -19.07203 -17.97014 -17.55849 -16.65591 -16.39290 -15.86286 -15.63861 -15.50010 -14.48066 -14.32196 -14.00190 -13.68597 -13.44420 -13.06537 -12.64514 -12.56792 -12.50059 -12.17112 -11.78367 -11.52520 -11.27423 -11.05807 -10.78390 -10.28289 -9.12607 -8.27372 -6.32127 0.85353 1.36760 1.40932 1.51039 1.64484 1.90481 2.36316 3.05694 3.18527 3.39458 3.75020 3.89300 4.03175 4.26439 4.37106 4.42954 4.52361 4.65177 4.68287 4.83743 4.92733 4.95818 5.13717 5.19651 5.51739 5.87887 6.01443 6.23788 6.56050 6.74077 7.31367 7.79233 8.89463 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.054910 B = 0.007365 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.801671 B = 3801.065006 C = 3840.280557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.551 5.551 3 C 0.175 3.825 4 C -0.520 4.520 5 H 0.033 0.967 6 C 0.007 3.993 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.244 1.244 12 C 0.140 3.860 13 C 0.187 3.813 14 N -0.333 5.333 15 N -0.353 5.353 16 C 0.163 3.837 17 N -0.471 5.471 18 C 0.054 3.946 19 H 0.061 0.939 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.034 0.966 23 H 0.005 0.995 24 H 0.267 0.733 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.266 0.734 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -10.444 -15.696 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.277 5.277 3 C 0.048 3.952 4 C -0.559 4.559 5 H 0.051 0.949 6 C -0.191 4.191 7 N -0.591 5.591 8 Si 0.773 3.227 9 H -0.187 1.187 10 H -0.211 1.211 11 H -0.168 1.168 12 C 0.010 3.990 13 C -0.082 4.082 14 N -0.174 5.174 15 N -0.192 5.192 16 C -0.125 4.125 17 N -0.162 5.162 18 C -0.087 4.087 19 H 0.080 0.920 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.022 0.978 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.282 0.718 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.348 -11.159 -14.430 19.009 hybrid contribution -0.936 1.538 -1.060 2.090 sum -6.284 -9.620 -15.490 19.287 Atomic orbital electron populations 1.22358 0.87092 1.00386 1.00977 1.61673 1.08775 1.15563 1.41661 1.19961 0.95657 0.84396 0.95140 1.21239 1.35187 0.97483 1.01966 0.94908 1.25894 0.96869 0.98417 0.97882 1.70061 1.48538 1.13921 1.26536 0.85671 0.79228 0.78692 0.79094 1.18669 1.21129 1.16771 1.20404 1.02081 0.83199 0.93300 1.24766 0.86662 0.97995 0.98824 1.74163 1.27192 0.96659 1.19350 1.74131 1.07146 1.17851 1.20070 1.27262 0.99487 0.87141 0.98614 1.46461 1.18000 1.09456 1.42282 1.22696 0.87964 1.00631 0.97414 0.92001 0.93186 0.93721 0.94827 0.97765 0.92408 0.88308 0.90424 0.71797 0.87585 0.89272 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 7.81 127.69 1.00 2.38 16 2 N -0.55 -22.28 4.74 -931.69 -4.42 -26.70 16 3 C 0.17 8.02 3.79 85.55 0.32 8.34 16 4 C -0.52 -29.82 9.01 25.60 0.23 -29.59 16 5 H 0.03 2.13 7.37 -2.91 -0.02 2.11 16 6 C 0.01 0.38 5.47 84.65 0.46 0.84 16 7 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 8 Si 0.95 42.67 27.47 68.60 1.88 44.55 16 9 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 12 C 0.14 4.46 5.20 85.56 0.44 4.91 16 13 C 0.19 5.98 6.65 137.98 0.92 6.90 16 14 N -0.33 -12.97 12.21 -50.16 -0.61 -13.59 16 15 N -0.35 -12.08 12.21 -59.99 -0.73 -12.81 16 16 C 0.16 3.67 12.74 180.11 2.30 5.96 16 17 N -0.47 -10.53 2.77 -542.07 -1.50 -12.04 16 18 C 0.05 0.62 10.16 127.77 1.30 1.92 16 19 H 0.06 1.89 5.84 -2.39 -0.01 1.87 16 20 H 0.05 2.10 6.76 -2.38 -0.02 2.08 16 21 H 0.04 1.27 7.16 -2.39 -0.02 1.26 16 22 H 0.03 1.54 6.99 -2.39 -0.02 1.53 16 23 H 0.00 0.20 7.55 -2.39 -0.02 0.18 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.10 3.24 7.93 -2.39 -0.02 3.22 16 26 H 0.08 1.92 7.84 -2.39 -0.02 1.90 16 27 H 0.27 2.65 8.06 -2.91 -0.02 2.62 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.25 4.70 -2.39 -0.01 1.24 16 30 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -78.63 249.75 2.97 -75.66 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.08 Total: 2.29 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 6.97 Total: 1.65 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -6.97 Total: -124.16 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -78.63 2.97 -75.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308103067.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.737 kcal (2) G-P(sol) polarization free energy of solvation -78.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds