Wall clock time and date at job start Sun Mar 29 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.41379 * 126.80052 * 95.00361 * 15 14 12 17 17 C 1.35449 * 103.98965 * 179.97438 * 16 15 14 18 18 O 1.34043 * 106.44344 * 359.97438 * 17 16 15 19 19 N 1.20920 * 111.56466 * 359.71090 * 18 17 16 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 25 25 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 26 26 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 27 27 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 28 28 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 29 29 H 1.07999 * 128.00983 * 0.03221 * 16 15 14 30 30 H 1.07993 * 126.78077 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5890 -0.1157 4.1598 17 6 3.8055 -0.9696 5.1887 18 8 2.7727 -1.8240 5.1965 19 7 1.9843 -1.5762 4.3138 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.8762 -2.6150 0.3648 25 1 1.9060 -2.5657 2.1436 26 1 0.4385 -2.0742 1.2639 27 1 1.9297 1.0871 2.3124 28 1 0.5722 -0.0344 2.5727 29 1 4.2059 0.7115 3.8411 30 1 4.6446 -0.9633 5.8685 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308132748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:17 Heat of formation + Delta-G solvation = 72.148442 kcal Electronic energy + Delta-G solvation = -13937.805466 eV Core-core repulsion = 11544.099516 eV Total energy + Delta-G solvation = -2393.705950 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.65010 -37.39549 -34.04109 -32.45857 -31.37008 -28.80987 -27.24428 -25.18317 -24.03426 -22.69365 -20.85072 -19.22861 -17.45621 -17.28329 -16.15966 -15.19045 -14.79478 -14.28701 -13.78638 -13.43145 -13.03264 -12.56765 -12.15202 -11.61910 -11.28852 -11.06015 -10.98040 -10.82049 -10.61319 -10.46757 -10.03108 -10.00364 -9.71720 -9.38545 -8.88458 -8.40680 -7.20851 -6.02618 -4.06248 1.74652 2.54407 3.29695 3.37529 3.42537 3.50762 4.40315 4.53087 4.84522 5.20949 5.30342 5.41946 5.59271 5.72911 6.03677 6.11691 6.27019 6.33783 6.46612 6.68037 6.82347 6.92073 7.08810 7.43663 7.70003 7.81233 8.06555 8.34376 8.55002 8.56858 8.99673 9.58835 11.04694 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058142 B = 0.007354 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.462785 B = 3806.292696 C = 3930.250817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.529 5.529 13 C 0.034 3.966 14 C 0.125 3.875 15 C 0.040 3.960 16 C -0.217 4.217 17 C -0.076 4.076 18 O 0.090 5.910 19 N -0.367 5.367 20 H 0.032 0.968 21 H 0.090 0.910 22 H 0.008 0.992 23 H 0.260 0.740 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.020 0.980 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.169 0.831 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -1.211 11.871 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.004 4.004 15 C -0.119 4.119 16 C -0.239 4.239 17 C -0.158 4.158 18 O 0.025 5.975 19 N -0.073 5.073 20 H 0.051 0.949 21 H 0.108 0.892 22 H 0.027 0.973 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.187 0.813 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.327 -1.927 11.660 12.277 hybrid contribution 0.098 0.313 -0.971 1.025 sum 3.425 -1.614 10.689 11.340 Atomic orbital electron populations 1.22426 1.00743 0.99560 1.00616 1.19350 0.89866 0.94595 0.85648 0.94074 1.21144 1.30565 1.12506 0.89565 0.91845 1.24925 0.95207 0.95137 0.99014 1.69889 1.37071 1.23105 1.23349 0.86453 0.78542 0.79671 0.82829 1.19747 1.21143 1.21018 1.62378 1.59562 1.02235 1.01193 1.22254 0.97312 0.90813 1.01083 1.20395 0.95988 0.97574 0.86439 1.23800 0.95373 0.93988 0.98748 1.22745 0.98812 1.04274 0.98034 1.25905 0.95234 0.92657 1.01985 1.84808 1.25553 1.45945 1.41195 1.73841 1.14478 1.17605 1.01392 0.94941 0.89173 0.97342 0.93020 0.90850 0.93715 0.96181 0.89328 0.93738 0.81310 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.28 37.16 0.31 -3.95 16 2 C 0.21 5.33 2.34 -68.87 -0.16 5.17 16 3 H 0.04 1.12 8.03 -51.93 -0.42 0.70 16 4 C -0.50 -13.73 7.94 -34.44 -0.27 -14.00 16 5 H 0.06 1.76 6.75 -52.49 -0.35 1.41 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.53 -11.77 4.73 -237.74 -1.13 -12.90 16 13 C 0.03 0.73 8.72 60.06 0.52 1.25 16 14 C 0.13 2.39 4.99 -4.98 -0.02 2.36 16 15 C 0.04 0.69 6.06 -82.10 -0.50 0.20 16 16 C -0.22 -2.97 11.12 -39.38 -0.44 -3.41 16 17 C -0.08 -0.86 12.30 29.74 0.37 -0.50 16 18 O 0.09 1.31 11.20 17.17 0.19 1.51 16 19 N -0.37 -6.41 11.00 33.42 0.37 -6.04 16 20 H 0.03 0.78 6.38 -51.93 -0.33 0.45 16 21 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 22 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.07 1.65 6.53 -51.93 -0.34 1.31 16 25 H 0.04 0.91 6.37 -51.93 -0.33 0.58 16 26 H 0.02 0.43 6.28 -51.93 -0.33 0.10 16 27 H 0.09 1.58 8.00 -51.93 -0.42 1.17 16 28 H 0.04 0.87 6.94 -51.93 -0.36 0.51 16 29 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 248.69 15.07 3.75 3.75 Total: -1.00 -29.95 248.69 -5.02 -34.97 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -3.52 Total: -1.53 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.29 Total: -11.36 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.13 Total: -43.71 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.19 Total: 1.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.95 -5.02 -34.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.119 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds