Wall clock time and date at job start Sun Mar 29 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.41379 * 126.80052 * 95.00361 * 15 14 12 17 17 C 1.35449 * 103.98965 * 179.97438 * 16 15 14 18 18 O 1.34043 * 106.44344 * 359.97438 * 17 16 15 19 19 N 1.20920 * 111.56466 * 359.71090 * 18 17 16 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 25 25 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 26 26 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 27 27 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 28 28 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 29 29 H 1.07999 * 128.00983 * 0.03221 * 16 15 14 30 30 H 1.07993 * 126.78077 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5890 -0.1157 4.1598 17 6 3.8055 -0.9696 5.1887 18 8 2.7727 -1.8240 5.1965 19 7 1.9843 -1.5762 4.3138 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.8762 -2.6150 0.3648 25 1 1.9060 -2.5657 2.1436 26 1 0.4385 -2.0742 1.2639 27 1 1.9297 1.0871 2.3124 28 1 0.5722 -0.0344 2.5727 29 1 4.2059 0.7115 3.8411 30 1 4.6446 -0.9633 5.8685 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308132748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:17 Heat of formation + Delta-G solvation = 51.733630 kcal Electronic energy + Delta-G solvation = -13938.690719 eV Core-core repulsion = 11544.099516 eV Total energy + Delta-G solvation = -2394.591203 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.82073 -39.16386 -35.54288 -34.24778 -32.52418 -30.69567 -28.87627 -27.25476 -25.74429 -23.86698 -22.23015 -20.95203 -18.65129 -18.51042 -18.17260 -17.03184 -16.18767 -16.04300 -15.50903 -14.95953 -14.51841 -14.11956 -13.72574 -13.42229 -12.98620 -12.88143 -12.71440 -12.65527 -12.40759 -12.13749 -11.97012 -11.84360 -11.11200 -10.86472 -10.52007 -10.45673 -8.99983 -8.13002 -6.23843 0.72391 1.35771 1.41179 1.43400 1.55042 2.42381 2.58704 3.16456 3.22697 3.55534 3.72178 4.32166 4.44154 4.46080 4.54866 4.64704 4.69090 4.75347 4.86188 4.96055 5.08140 5.10652 5.23649 5.47410 5.66868 5.74026 6.10707 6.38040 6.61812 6.87876 7.45146 7.46999 8.93644 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058142 B = 0.007354 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.462785 B = 3806.292696 C = 3930.250817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.216 3.784 3 H 0.018 0.982 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.536 5.536 13 C 0.045 3.955 14 C 0.129 3.871 15 C 0.011 3.989 16 C -0.234 4.234 17 C -0.044 4.044 18 O 0.092 5.908 19 N -0.397 5.397 20 H 0.028 0.972 21 H 0.066 0.934 22 H 0.026 0.974 23 H 0.262 0.738 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.015 0.985 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.188 0.812 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -1.667 12.932 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.109 3.891 3 H 0.035 0.965 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.260 5.260 13 C -0.103 4.103 14 C 0.000 4.000 15 C -0.147 4.147 16 C -0.256 4.256 17 C -0.125 4.125 18 O 0.026 5.974 19 N -0.103 5.103 20 H 0.047 0.953 21 H 0.085 0.915 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.205 0.795 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 4.650 -2.382 12.727 13.758 hybrid contribution -0.269 0.465 -1.180 1.297 sum 4.381 -1.917 11.547 12.498 Atomic orbital electron populations 1.22236 1.00352 0.99145 1.00274 1.19118 0.90027 0.93349 0.86563 0.96456 1.21376 1.30785 1.12519 0.90867 0.92663 1.25669 0.95317 0.95793 1.01762 1.70000 1.37727 1.24116 1.24094 0.85476 0.78078 0.78630 0.79258 1.19435 1.20668 1.20416 1.62255 1.59682 1.02529 1.01536 1.22121 0.96864 0.90461 1.00861 1.20310 0.95855 0.97825 0.85979 1.23687 0.97092 0.95072 0.98816 1.23030 0.97951 1.05718 0.98854 1.26853 0.94616 0.89898 1.01103 1.84760 1.26097 1.46357 1.40209 1.73832 1.15923 1.18175 1.02350 0.95262 0.91535 0.95523 0.92833 0.92290 0.92539 0.96672 0.88666 0.94666 0.79503 0.71669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.97 8.28 71.98 0.60 -7.37 16 2 C 0.22 11.09 2.34 44.17 0.10 11.20 16 3 H 0.02 0.97 8.03 -2.39 -0.02 0.95 16 4 C -0.52 -28.75 7.94 25.60 0.20 -28.55 16 5 H 0.06 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.68 11.32 21.45 0.24 -52.43 16 8 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.54 -23.96 4.73 -906.06 -4.29 -28.25 16 13 C 0.05 1.96 8.72 127.69 1.11 3.07 16 14 C 0.13 4.91 4.99 85.56 0.43 5.34 16 15 C 0.01 0.38 6.06 43.58 0.26 0.64 16 16 C -0.23 -5.79 11.12 22.40 0.25 -5.54 16 17 C -0.04 -0.81 12.30 67.17 0.83 0.01 16 18 O 0.09 2.44 11.20 71.60 0.80 3.24 16 19 N -0.40 -13.35 11.00 -49.55 -0.55 -13.89 16 20 H 0.03 1.42 6.38 -2.39 -0.02 1.40 16 21 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 22 H 0.03 1.17 6.75 -2.38 -0.02 1.15 16 23 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 24 H 0.06 2.67 6.53 -2.39 -0.02 2.66 16 25 H 0.06 2.28 6.37 -2.39 -0.02 2.27 16 26 H 0.01 0.65 6.28 -2.39 -0.01 0.63 16 27 H 0.10 3.41 8.00 -2.39 -0.02 3.39 16 28 H 0.04 1.39 6.94 -2.39 -0.02 1.37 16 29 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.27 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -64.67 248.69 3.61 -61.06 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.14 Total: 4.38 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.23 Total: -20.02 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -4.59 Total: -94.58 kcal Atomic # 8 Polarization: 2.44 SS G_CDS: 0.80 Total: 3.24 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -64.67 3.61 -61.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.793 kcal (2) G-P(sol) polarization free energy of solvation -64.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds