Wall clock time and date at job start Sun Mar 29 2020 21:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.50702 * 109.47004 * 170.00406 * 14 12 2 16 16 C 1.41381 * 126.80404 * 94.70855 * 15 14 12 17 17 C 1.35449 * 103.98683 * 179.89196 * 16 15 14 18 18 O 1.34043 * 106.44459 * 0.36599 * 17 16 15 19 19 N 1.20921 * 111.56798 * 359.75473 * 18 17 16 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 25 25 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 26 26 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 27 27 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 28 28 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 29 29 H 1.07999 * 128.00211 * 0.02562 * 16 15 14 30 30 H 1.07998 * 126.77635 * 180.10150 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5161 -3.5795 16 6 1.9501 -1.4369 -4.5138 17 6 2.9831 -1.6760 -5.3566 18 8 4.0133 -0.9427 -4.9117 19 7 3.7143 -0.3074 -3.9272 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7096 1.1617 3.4844 24 1 0.3491 -1.9548 -1.3694 25 1 1.8140 -2.5260 -2.2042 26 1 1.7059 -2.6220 -0.4303 27 1 0.6814 0.1054 -2.6087 28 1 2.1025 1.1190 -2.2604 29 1 0.9536 -1.8518 -4.5487 30 1 2.9790 -2.3315 -6.2148 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308132749.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:19 Heat of formation + Delta-G solvation = 71.597366 kcal Electronic energy + Delta-G solvation = -13929.493689 eV Core-core repulsion = 11535.763842 eV Total energy + Delta-G solvation = -2393.729847 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.65748 -37.42186 -34.05286 -32.42249 -31.41704 -28.85703 -27.18220 -25.24056 -24.02071 -22.83949 -20.76887 -19.25002 -17.46894 -17.26489 -16.17331 -15.19861 -14.83411 -14.23954 -13.82189 -13.48633 -13.07298 -12.67475 -12.16283 -11.58244 -11.31136 -11.08935 -10.96402 -10.81281 -10.68763 -10.43923 -10.06182 -9.95024 -9.76209 -9.38726 -8.91289 -8.38398 -7.21012 -6.01093 -4.04575 1.74300 2.52469 3.32328 3.38345 3.42025 3.49761 4.41604 4.53100 4.78980 5.20146 5.31465 5.36829 5.51331 5.73871 5.99136 6.07834 6.16795 6.30984 6.35617 6.63249 6.77996 6.85563 7.07370 7.41279 7.68368 7.82659 8.09646 8.34656 8.55030 8.60410 9.01015 9.60324 11.06212 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056728 B = 0.007398 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.469031 B = 3783.849049 C = 3930.775260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.033 3.967 14 C 0.126 3.874 15 C 0.038 3.962 16 C -0.230 4.230 17 C -0.075 4.075 18 O 0.093 5.907 19 N -0.352 5.352 20 H 0.090 0.910 21 H 0.033 0.967 22 H 0.007 0.993 23 H 0.260 0.740 24 H 0.021 0.979 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -4.592 -12.888 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.253 5.253 13 C -0.115 4.115 14 C -0.003 4.003 15 C -0.122 4.122 16 C -0.252 4.252 17 C -0.156 4.156 18 O 0.027 5.973 19 N -0.056 5.056 20 H 0.108 0.892 21 H 0.052 0.948 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.184 0.816 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.982 -3.763 -12.192 12.797 hybrid contribution -1.483 -0.867 0.571 1.810 sum -0.501 -4.629 -11.621 12.519 Atomic orbital electron populations 1.22423 1.00671 0.99531 1.00610 1.19352 0.89856 0.94577 0.85681 0.94186 1.21087 1.30505 1.12544 0.89532 0.91951 1.24922 0.95212 0.95167 0.98997 1.69880 1.37091 1.23080 1.23437 0.86497 0.78534 0.79975 0.82394 1.20654 1.21345 1.19966 1.62343 1.59072 1.02448 1.01403 1.22268 0.96452 0.91809 1.00990 1.20358 0.95681 0.97426 0.86867 1.23773 0.90698 0.98533 0.99186 1.22762 1.02168 1.03012 0.97256 1.25900 0.87436 1.00105 1.02182 1.84853 1.36269 1.43574 1.32616 1.73867 1.16539 1.14940 1.00239 0.89169 0.94811 0.97428 0.92980 0.96062 0.94015 0.90874 0.93314 0.89783 0.81639 0.77241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.22 37.16 0.31 -3.83 16 2 C 0.21 5.36 2.31 -68.86 -0.16 5.21 16 3 H 0.04 1.12 7.93 -51.93 -0.41 0.71 16 4 C -0.50 -13.82 7.97 -34.44 -0.27 -14.10 16 5 H 0.06 1.75 7.10 -52.49 -0.37 1.38 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.57 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.74 4.69 -237.73 -1.12 -12.86 16 13 C 0.03 0.66 8.63 60.06 0.52 1.18 16 14 C 0.13 2.40 5.13 -4.97 -0.03 2.38 16 15 C 0.04 0.66 6.02 -82.10 -0.49 0.16 16 16 C -0.23 -3.04 10.07 -39.38 -0.40 -3.44 16 17 C -0.07 -0.83 12.30 29.74 0.37 -0.47 16 18 O 0.09 1.38 11.20 17.17 0.19 1.57 16 19 N -0.35 -6.37 12.07 33.42 0.40 -5.97 16 20 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 21 H 0.03 0.77 6.33 -51.93 -0.33 0.45 16 22 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.02 0.40 6.21 -51.93 -0.32 0.08 16 25 H 0.04 0.74 6.35 -51.93 -0.33 0.41 16 26 H 0.07 1.56 6.86 -51.93 -0.36 1.21 16 27 H 0.05 0.87 7.06 -51.93 -0.37 0.50 16 28 H 0.08 1.66 7.93 -51.93 -0.41 1.24 16 29 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 249.25 15.07 3.76 3.76 Total: -1.00 -30.42 249.25 -4.97 -35.39 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -3.55 Total: -2.11 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.25 Total: -11.40 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.08 Total: -43.77 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.42 -4.97 -35.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132749.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.988 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds