Wall clock time and date at job start Sun Mar 29 2020 21:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.50702 * 109.47004 * 170.00406 * 14 12 2 16 16 C 1.41381 * 126.80404 * 94.70855 * 15 14 12 17 17 C 1.35449 * 103.98683 * 179.89196 * 16 15 14 18 18 O 1.34043 * 106.44459 * 0.36599 * 17 16 15 19 19 N 1.20921 * 111.56798 * 359.75473 * 18 17 16 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 25 25 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 26 26 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 27 27 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 28 28 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 29 29 H 1.07999 * 128.00211 * 0.02562 * 16 15 14 30 30 H 1.07998 * 126.77635 * 180.10150 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5161 -3.5795 16 6 1.9501 -1.4369 -4.5138 17 6 2.9831 -1.6760 -5.3566 18 8 4.0133 -0.9427 -4.9117 19 7 3.7143 -0.3074 -3.9272 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7096 1.1617 3.4844 24 1 0.3491 -1.9548 -1.3694 25 1 1.8140 -2.5260 -2.2042 26 1 1.7059 -2.6220 -0.4303 27 1 0.6814 0.1054 -2.6087 28 1 2.1025 1.1190 -2.2604 29 1 0.9536 -1.8518 -4.5487 30 1 2.9790 -2.3315 -6.2148 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308132749.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:18 Heat of formation + Delta-G solvation = 50.288340 kcal Electronic energy + Delta-G solvation = -13930.417717 eV Core-core repulsion = 11535.763842 eV Total energy + Delta-G solvation = -2394.653876 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.83034 -39.14853 -35.55809 -34.22428 -32.53879 -30.72563 -28.73405 -27.29901 -25.71558 -23.96375 -22.15680 -20.94718 -18.65779 -18.48468 -18.17875 -17.03510 -16.24182 -15.98343 -15.42647 -15.00154 -14.47178 -14.11428 -13.90128 -13.29458 -13.02069 -12.84894 -12.66165 -12.61218 -12.40988 -12.10871 -12.01143 -11.76051 -11.08772 -10.89946 -10.51357 -10.46395 -8.93175 -8.12960 -6.24089 0.75364 1.34537 1.41295 1.42622 1.52694 2.41875 2.60505 3.16084 3.28501 3.44880 3.84027 4.30258 4.38753 4.47312 4.57476 4.69518 4.71273 4.82042 4.84464 4.94999 5.09208 5.13827 5.22356 5.48713 5.67848 5.76266 6.16648 6.43686 6.64215 6.87942 7.45045 7.51987 8.93265 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056728 B = 0.007398 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.469031 B = 3783.849049 C = 3930.775260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.269 1.269 12 N -0.546 5.546 13 C 0.042 3.958 14 C 0.130 3.870 15 C 0.011 3.989 16 C -0.239 4.239 17 C -0.045 4.045 18 O 0.093 5.907 19 N -0.395 5.395 20 H 0.062 0.938 21 H 0.039 0.961 22 H 0.029 0.971 23 H 0.262 0.738 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.192 0.808 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -6.340 -14.377 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.271 5.271 13 C -0.106 4.106 14 C 0.002 3.998 15 C -0.148 4.148 16 C -0.260 4.260 17 C -0.126 4.126 18 O 0.026 5.974 19 N -0.099 5.099 20 H 0.081 0.919 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.209 0.791 30 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 0.737 -5.509 -13.688 14.774 hybrid contribution -1.377 -0.332 0.906 1.682 sum -0.640 -5.842 -12.782 14.068 Atomic orbital electron populations 1.22198 0.99535 0.99708 1.00288 1.19088 0.90596 0.92657 0.86759 0.97932 1.21339 1.30719 1.12525 0.90951 0.92887 1.25682 0.95333 0.95837 1.01785 1.70002 1.37773 1.24095 1.24120 0.85523 0.77958 0.79038 0.78900 1.20518 1.20561 1.19324 1.62175 1.59801 1.03526 1.01560 1.22201 0.96930 0.90347 1.01171 1.20227 0.96812 0.96255 0.86530 1.23690 0.91098 1.00335 0.99665 1.23051 1.03920 1.02461 0.96598 1.26904 0.85227 0.98233 1.02189 1.84797 1.37370 1.43577 1.31704 1.73871 1.17403 1.16713 1.01894 0.91873 0.94190 0.95255 0.92853 0.95141 0.91534 0.92884 0.91851 0.91822 0.79108 0.71622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.59 8.22 71.98 0.59 -7.00 16 2 C 0.22 11.24 2.31 44.17 0.10 11.34 16 3 H 0.00 0.16 7.93 -2.39 -0.02 0.14 16 4 C -0.52 -29.23 7.97 25.60 0.20 -29.02 16 5 H 0.05 3.03 7.10 -2.91 -0.02 3.01 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 8 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.55 -24.43 4.69 -906.04 -4.25 -28.68 16 13 C 0.04 1.61 8.63 127.69 1.10 2.71 16 14 C 0.13 4.98 5.13 85.56 0.44 5.42 16 15 C 0.01 0.35 6.02 43.58 0.26 0.61 16 16 C -0.24 -5.49 10.07 22.40 0.23 -5.27 16 17 C -0.04 -0.80 12.30 67.17 0.83 0.02 16 18 O 0.09 2.53 11.20 71.61 0.80 3.34 16 19 N -0.39 -14.01 12.07 -49.56 -0.60 -14.61 16 20 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 21 H 0.04 1.82 6.33 -2.39 -0.02 1.81 16 22 H 0.03 1.23 6.91 -2.38 -0.02 1.21 16 23 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 24 H 0.03 1.11 6.21 -2.39 -0.01 1.09 16 25 H 0.07 2.22 6.35 -2.39 -0.02 2.20 16 26 H 0.05 2.24 6.86 -2.39 -0.02 2.23 16 27 H 0.06 2.19 7.06 -2.39 -0.02 2.17 16 28 H 0.06 2.62 7.93 -2.39 -0.02 2.60 16 29 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.27 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -67.42 249.25 3.56 -63.86 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 1.14 Total: 2.83 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.20 Total: -20.05 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -4.61 Total: -96.47 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.80 Total: 3.34 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.42 3.56 -63.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308132749.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.151 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds